Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 715 a.a., ATP-dependent DNA 3 from Pseudomonas putida KT2440

 Score =  585 bits (1508), Expect = e-171
 Identities = 306/588 (52%), Positives = 402/588 (68%), Gaps = 19/588 (3%)

Query: 1   VVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSA 60
           V  GGDALVLMPTGGGKSLC+Q+P + R     G+ +VVSPLIALM DQV  L E GVSA
Sbjct: 29  VANGGDALVLMPTGGGKSLCFQVPGLLRP----GLTVVVSPLIALMDDQVATLDELGVSA 84

Query: 61  AFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEA 120
           A LNSTL  E+ +++  R+ RGE+ +LY APER+  PR L  L  L     +SLFAIDEA
Sbjct: 85  AALNSTLTAEQQRELAGRLRRGEVKMLYLAPERLVQPRMLDFLRDLD----ISLFAIDEA 140

Query: 121 HCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSF 180
           HCVSQWGHDFRPEY  L  L E +  VPRIALTATAD  TR +IV+RL L+ A +F+SSF
Sbjct: 141 HCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRTREEIVQRLHLQGAERFLSSF 200

Query: 181 DRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYH 240
           DRPNI Y IV K+    QL+ F+  E  G+AG+VYC SRK+V++ A  L   G  ALPYH
Sbjct: 201 DRPNIFYRIVPKEAPRKQLMAFLG-ERRGNAGIVYCLSRKKVDETAAFLCSQGFPALPYH 259

Query: 241 AGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRA 300
           AGL A  R  +Q RFL EEG++MVATIAFGMGIDKP+VRFV HLD+PK++E YYQETGRA
Sbjct: 260 AGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKSLEAYYQETGRA 319

Query: 301 GRDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLL 360
           GRDG P+DAWMAYGLQD+V  ++M+  S   E  K++ + KLDA+L+L E + CRR  LL
Sbjct: 320 GRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAMLALCEETRCRRQSLL 379

Query: 361 GYFGE-KSTPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGK 419
            YF E    PCG+CDNC++  Q WD T+ AR+ LS ++R    +G  +G GH++D+L GK
Sbjct: 380 AYFDEILEQPCGHCDNCVDNIQTWDATEPARQALSAVFR----TGQRYGVGHLVDVLLGK 435

Query: 420 ATEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVL 479
            TEKV+ FGHE++S FG+G   +EV  R + RQL+A G + +D E +  L+L++  R +L
Sbjct: 436 DTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLEGYGGLRLSDSCRPLL 495

Query: 480 RGEAQVTLRESVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEH 539
           RGE  + LR  +     + ++  + +     SPA+  +    +  +EAL+  R ++A+EH
Sbjct: 496 RGEVTLQLRRDL-----KPQTTAKTSSSSGGSPASQLVRAEERDLWEALRTLRRKLAEEH 550

Query: 540 NLPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVLRV 587
           ++P YVIF D+TL  +    P +L D+  +SG+G +KLE YG   L V
Sbjct: 551 SVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFLEV 598