Pairwise Alignments

Query, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  111 bits (278), Expect = 1e-29
 Identities = 75/251 (29%), Positives = 127/251 (50%), Gaps = 16/251 (6%)

Query: 7   LVAAALSGFAFFGLAGMAQAQGEPLRVATDATFPPMEFVE-NGKRTGFDVELVEAIGKTL 65
           L A ALS F+      ++QA  +PL++  +A +PP  F + +G   GFD ++  A+ + +
Sbjct: 7   LGALALSVFSL-----VSQAAEKPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEM 61

Query: 66  GRKIEWIDIDFKGLVPGLISKRFDMAVSGIYITDERKKVVDFTVPYYAGGLVVMVKDGNT 125
             K  W++ +F GL+P L  ++ D  +S + ITD+RKK VDFT  YY     +++KDG T
Sbjct: 62  KTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGTT 121

Query: 126 AIKTPADINGKKVSVQVGTKSVSYTKEKF--PQVQLMEVEKNQEMFNLVDIGRADAAVTG 183
              +  ++ GKK+ VQ G+    + KE        ++      E++  V  GR D  V  
Sbjct: 122 VSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVAD 181

Query: 184 KPAAYQ-YVRTRG--GLKVLPEQITTEEY-----GMAIRKDTPELTKAVNGAIEKLKADG 235
                  +++T    G   +    T  +Y     G+A+RK        +N AI+ ++A+G
Sbjct: 182 ATLLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRANG 241

Query: 236 TYDQIVKKWFS 246
            Y +I  K+F+
Sbjct: 242 KYKEIESKYFN 252