Pairwise Alignments

Query, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

 Score =  114 bits (284), Expect = 2e-30
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 29  EPLRVATDATFPPMEFVE-NGKRTGFDVELVEAIGKTLGRKIEWIDIDFKGLVPGLISKR 87
           E LR+  +A +PP    + +G   GFD ++ +A+   +  +   +  D+ G++P L +K+
Sbjct: 25  EKLRMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVECSVVTSDWDGIIPALNAKK 84

Query: 88  FDMAVSGIYITDERKKVVDFTVPYYAGGLVVMVKDGNTAIKTPAD-INGKKVSVQVGTKS 146
           FD  VS + ITDERK+ VDFT PYY+  L   +   N   KT  + + GK +  Q  T +
Sbjct: 85  FDFLVSSLSITDERKQAVDFTNPYYSNKL-QFIAPKNVDFKTDKESLKGKVIGTQRATLA 143

Query: 147 VSYTKEKFPQVQLMEVEKNQEMFNLVDIGRADAAVTGKPAAYQYVRTRGG----LKVLPE 202
            +Y ++ +P V++   +  +  +  +  GR D  +  K   Y++++++ G     K  P 
Sbjct: 144 GTYLEDNYPDVEIKLYDTQENAYLDLVSGRIDGILADKYVQYEWLKSKDGSNFEFKGEP- 202

Query: 203 QITTEEYGMAIRKDTPELTKAVNGAIEKLKADGTYDQIVKKWF 245
            + +++ G+A+RK   +L   +N A+ ++KADGTY +I  K+F
Sbjct: 203 VMDSDKIGIAVRKGDTKLRDDLNKALAEIKADGTYKKINDKYF 245