Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 221 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 1e-38
 Identities = 76/215 (35%), Positives = 127/215 (59%), Gaps = 5/215 (2%)

Query: 1   MDLDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYV 60
           M+  F       P LL+GA  TV ++   +  G +LG  + + RL+ + + +      YV
Sbjct: 1   MEAGFQLALDSAPFLLKGAYYTVILSLGGMFFGLLLGFGLALMRLS-RFKLVSWLARVYV 59

Query: 61  AAIRGTPLLVQLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQT 120
           +  RGTPLLVQLF++++GLP  GI L      ++G  +   AY  EI+R AI SI++GQ 
Sbjct: 60  SFFRGTPLLVQLFLIYYGLPQVGIELDPIPAAMIGFSLNMAAYACEILRAAIGSIERGQW 119

Query: 121 MAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKII 180
            AA S+GMT    +R+ +LPQA+   +PPLGN FI+L+K++AL + + + ++  + Q + 
Sbjct: 120 EAAASIGMTRAQTLRRAILPQAMRTALPPLGNSFISLVKDTALAATIQVPELFRQAQLVS 179

Query: 181 SVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKL 215
           + ++    +YL+ A++Y++L      IL H + +L
Sbjct: 180 ARTFEIFTMYLSAALIYWILAS----ILAHLQNRL 210