Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 320 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  148 bits (373), Expect = 1e-40
 Identities = 85/211 (40%), Positives = 132/211 (62%), Gaps = 7/211 (3%)

Query: 9   WQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRL--NPKRRWIYGACTAYVAAIRGT 66
           W   P L  G   T+ I+  + ALG V+GL  G+ RL  NP  R +    T YV  +RGT
Sbjct: 113 WAAGP-LAWGLWTTLWISVVSGALGLVIGLFAGLCRLSNNPTLRDL---STVYVELVRGT 168

Query: 67  PLLVQLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQSL 126
           PLLVQ+FI +F +     L   F  GV  L +++GAYV+EIVR  +QSI KGQ  AA+SL
Sbjct: 169 PLLVQIFIFYFFIGTVLNLSREF-AGVAALALFTGAYVAEIVRAGVQSIAKGQNEAARSL 227

Query: 127 GMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISVSYRS 186
           G+  G +MR ++LPQA  R++PPL  +FI+L+K+++LVS++ I ++   G++ I+ S+ +
Sbjct: 228 GLNAGQSMRHVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKSGREAITTSFST 287

Query: 187 LEVYLAIAVVYFVLTGTMTLILRHFEQKLRQ 217
            E++  +A +Y ++   ++ I    E++L Q
Sbjct: 288 FEIWFCVAGLYLLINLPLSHIASRLERRLAQ 318