Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 218 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  141 bits (355), Expect = 1e-38
 Identities = 80/210 (38%), Positives = 125/210 (59%), Gaps = 7/210 (3%)

Query: 13  PDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKR--RWIYGACTAYVAAIRGTPLLV 70
           P +L+GA VT++IT     L  V   L  +G+++  R  RW    C  Y+   RGT LLV
Sbjct: 6   PLMLQGAWVTLQITFFGSLLAIVAATLAALGKMSTWRPLRWF---CVVYIEIFRGTSLLV 62

Query: 71  QLFILFF--GLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQSLGM 128
           QLF LFF   LP F + L  +   ++GLG++ GAY +EI+RGAI S+ KGQ  A  +L  
Sbjct: 63  QLFWLFFVLPLPPFNLELSPYTVAIVGLGLHIGAYGAEIMRGAINSVAKGQYEACTALNF 122

Query: 129 TPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKIISVSYRSLE 188
            P    R+I+LPQA++  + P  N  I L+KN++LVSL+T+ D+    +++   ++ +L+
Sbjct: 123 RPFTRFRRIILPQALLAAMGPGTNLLIELLKNTSLVSLITLADLSFRARQLDQATFETLK 182

Query: 189 VYLAIAVVYFVLTGTMTLILRHFEQKLRQG 218
           V+    ++YFV+   + L +R  E+ L +G
Sbjct: 183 VFALALLMYFVMAQAINLAMRRLERHLARG 212