Pairwise Alignments

Query, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 229 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  130 bits (326), Expect = 3e-35
 Identities = 77/224 (34%), Positives = 131/224 (58%), Gaps = 12/224 (5%)

Query: 3   LDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACT-AYVA 61
           +++  +++  P L  GA +T+E+ A A+  G +L + +GI R +  R W   A   +Y+ 
Sbjct: 1   MNWEVIFKWLPRLAEGATLTLELVAIAVVAGLILAIPLGIARSS--RHWYVRAVPFSYIF 58

Query: 62  AIRGTPLLVQLFILFFGLPHFGI---------LLPAFLCGVLGLGVYSGAYVSEIVRGAI 112
             RGTPLLVQLF++++GL  F           L   F C VL + +++ AY++EI+RGA+
Sbjct: 59  FFRGTPLLVQLFLVYYGLAQFDAVRSSSLWPYLRDPFWCTVLTMTLHTAAYIAEILRGAL 118

Query: 113 QSIDKGQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDV 172
           Q+I KG+  AA++LGM+ G  +  I+LP+A    +P   NE I ++K SAL S +T+ ++
Sbjct: 119 QAIPKGEIEAARALGMSRGKTLFYIMLPRAARIGLPAYSNEVILMLKASALASTVTLLEL 178

Query: 173 MHEGQKIISVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKLR 216
               + II+ +Y  +E++ A  V Y V++  +    +  E+ LR
Sbjct: 179 TGMARTIIARTYLPVEIFFAAGVFYLVISFMLVQGFKLLERWLR 222