Pairwise Alignments

Query, 788 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  250 bits (639), Expect = 2e-70
 Identities = 212/697 (30%), Positives = 323/697 (46%), Gaps = 67/697 (9%)

Query: 25  EGLSRLFDFEVDLLSPSAAIDLQSVLGKPLSLEIKTAGAP-RFLSGQVVRFSMIGREGRT 83
           E +S  F  +++L+S    +D   +L KP+   +     P R++ G V  FS    +G T
Sbjct: 29  EAISSPFRLQLELVSFEDDVDFAQLLDKPVLFTLWQGERPLRYVHGLVSTFS----QGET 84

Query: 84  S-RHTVYRASVRPSLWYLTRTSGFRIFQNKTVVEMLEEVFADYDF-AFEKKLTASYRQWE 141
               T YRA V P L      S +RIFQ KTV ++LE +       A+E K    ++  E
Sbjct: 85  GFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLDPHQVRE 144

Query: 142 HCAQYNESDFAFVSRLMELEGIYYYFKHEQNEHTLVLAD------------------DIG 183
            C Q  E+D  F++RL   EGI Y F H   +H L++ D                  D G
Sbjct: 145 FCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDDEDEG 204

Query: 184 AHEPMPGYETIDYFASDREVTEDIEVIDEWRVTGEVRTGRYTVDDFNFTTPGSDLTNVRS 243
            H    G + + Y  S     +    +   R + +VRT R    D+ FT P       R 
Sbjct: 205 FHNDDVGPDQVLY-RSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHP-----QYRQ 258

Query: 244 QPQPHDHAD------YEMYEWLGEYTNAGEGEHYARVRLEEAQALGERSEGHATVRGMAP 297
           + Q +D+++      YE +++ G Y     G  +   RL   +     +E       + P
Sbjct: 259 EHQAYDNSNTHQSLNYERFDYPGRYKRDAVGVPFTATRLTALRHDARIAEVEGDDVRLQP 318

Query: 298 GYKFTMRGSAREEDNREYLIVSVAYALREGGYASGVEQ----GEYGFGFVAQPTSLPYRA 353
           G  FT+    RE+ N  +  VSV +   EG   + +++     + G  +  +   +P R 
Sbjct: 319 GLSFTLIEHPREDLNVHWRTVSVHH---EGTQFTSLQEEAADSQQGTRYKQEALLVPGRT 375

Query: 354 ---PRVTSVPRTSGPQTAVVVGPEGKEIWTDQYGRVKVQFRWDRSGRRNENCSCFVRVSQ 410
              P     PR  GP  A VVGP+G+EI+ DQ+GRVKV F WDR    NE  SC+VRVSQ
Sbjct: 376 EWRPAPLPKPRIDGPHMATVVGPKGEEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQ 435

Query: 411 VFAGDGFGAVFTPRIGQEVIVDFIGGLADRPIITGRVYNPRHMPPFDLPGEDTKSGLVTR 470
            +AG  +G++  PRIGQ+VI+ ++    D+P+ITGR Y    +PP+DLP   T+  + ++
Sbjct: 436 GWAGGSWGSMAIPRIGQDVIIQYVNADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQ 495

Query: 471 STPGGSPATANSLVFEDRIGAEFVALHAERNLNVSVEADETHDTGGSRTTVIEGPDVLTD 530
           +  G      N L FED +G + V +HAER+ N  V+ DET   G  RT  +E       
Sbjct: 496 THKGEG---FNELRFEDELGRQEVFIHAERDQNNIVKHDETTRVGNDRTERVE------- 545

Query: 531 NTLRDATVN-GPDTLE-VNGPQTITINGPQTQTVNGLQTETINGPRVDTVTANEIRTVVA 588
              RD T++ G D  E +   +++ I   +   +    + +I      T   + I  V  
Sbjct: 546 ---RDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRITTGKDRIEQVGN 602

Query: 589 GRLDTVTAYETVVINGVRSETVHGPSTVTVDDARQDTFKSSWTREVTGASTDTLKSGLTE 648
            R D   A  TV I G R + V G ST+   +A + T K  +  +V+ + T    +GL  
Sbjct: 603 HRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTK-VYDIQVSESLTIRSPAGLLR 661

Query: 649 TI-TGTHKSTVSDAYDGEAKTVTIKATGGDVVITASG 684
               G     ++ A+ G    V+ +ATG + V + SG
Sbjct: 662 VDGAGITLDGLALAFKG---PVSQQATGSNRVTSTSG 695