Pairwise Alignments

Query, 1219 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  300 bits (768), Expect = 5e-85
 Identities = 301/1250 (24%), Positives = 529/1250 (42%), Gaps = 120/1250 (9%)

Query: 7    RFLIGRDLWVFLGLVALAFLIWIIGPAIAVGRYRPLEDEIVR-IAVIALMFAIWLARLVY 65
            R  +   L + LG V +   IW +GP       +PL     R +A +  +    L+ LV 
Sbjct: 18   RIGLAMPLLLGLGAVLMLVAIWWLGPQWTWRDQQPLASVAHRSMASLVFVLVALLSWLVV 77

Query: 66   RKWRERRLNAQLLNQLRTPSKKEKEAKPEDAPEIKELQSGFTDATAILKNMRFGQGADGK 125
             + R RRL A+   + +  + +    +P    + K L  G           R+   A G+
Sbjct: 78   LRTRFRRLQAE---RQQAMAAEVDPTQPFVHAQEKALSQGLA---------RYLDNAGGR 125

Query: 126  PASRFSVFDRQYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIGGTRNC 185
             A          LY+LPWY+ +GA  +GK++ +  +D  F L  ++ KA  RG       
Sbjct: 126  RA----------LYRLPWYLVLGARQAGKSSFIDCTDQSFSLT-RIDKAQARGRPAQALA 174

Query: 186  ---DWWFTNEAVLIDTAGRYTTHESNRE----------------TDEGEWKGFLELLKKF 226
                WW +N+AV+ID  G + +     +                T    W+  L+ L++ 
Sbjct: 175  YPVGWWISNDAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLLDWLQRN 234

Query: 227  RPRQPINGAILTISIADLPLADDAQRARHAMALRKRLLELRNDLGIDFPVYVLVTKTDLL 286
            R ++ +NG +L + +  L      QR   A  LR RL E+ + LG   P+YV+++K DLL
Sbjct: 235  RSQRALNGLVLVVDLPALLHGTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVLSKFDLL 294

Query: 287  AGFNEYFGSLGRAERQQVWGFTFPIEGNAANKAAKGAAPLKGGDLRERFHQEYRLLHQRL 346
             GF++++  L  A+R  ++GFTF ++      A  G            + + Y  L ++L
Sbjct: 295  DGFDQFYSKLSAAKRNSLFGFTFKLDAVDTFDAWLG-----------EYGEHYDRLLEQL 343

Query: 347  DERLPELLAAEPDPMRRAQAYLLPQQFASFEDILGTFLADVFNPSKFEAASMLRGVYFTS 406
             E++ + L  +  P  R++ Y L +Q      +L +FL +     +F   +++RGVY++S
Sbjct: 344  FEQVIDRLDVQGSPALRSRLYSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSS 403

Query: 407  GTQEGTAFDRVMGAIKRYLQVNAP--PAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRW 464
              Q G   +  +    +  + + P     P     +YF+++   +VI+++AG+AG N+R 
Sbjct: 404  VVQHGDVRNAFVREAAQPYKTSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRV 463

Query: 465  YRRKRAIDIAGYSVIGVLLVLFLGACVNSWRNNKDYVAEVDGNAKAFNKAAARGELPTVV 524
             RRKR +   G SV GVL        + SW    D       +  A ++  +  E+   +
Sbjct: 464  ARRKRQLLWVGSSV-GVLAFC---VAIASWHRYFDINGVKAASVLAKSREYSHHEVDQRL 519

Query: 525  DSGGDIASSLLILDRLRD-LPKSSHFDVSDPPLSYRFGLYQGEKLQAATDGVYQRALETV 583
            D  G   + L  LD++RD +     +  + P ++   GLYQG  +    D  Y   L   
Sbjct: 520  DPTG--RNLLEPLDQIRDAVAVFGDYRAAWPGVA-DLGLYQGRTIGPTVDEAYLSLLSRR 576

Query: 584  LLPQAAQRVEQSLREASKNDAEYSYEALKAYLMLFDAERYDADFLQAWLLSDVDRKIGAS 643
             LP  A  V +++ +A+   +E    AL+ Y ML D     A++++ W+     +     
Sbjct: 577  FLPALASGVIEAM-DAAPPGSEQQMAALRVYRMLEDRRNRRAEWVEDWMARQWQQAFPGQ 635

Query: 644  LTREQRTNLESHLKALFAGRVLTSPFAKDERLITQTRERLAGVPLAQRSYARLRRILLQT 703
               + + +L  HLK  +A     +   +  + ++  ++ L  VPL QR YA L++   Q 
Sbjct: 636  --GQLQRDLMRHLK--YALTYADTDLPQYRQRVSHVQQTLRKVPLPQRVYAGLKQ-QAQE 690

Query: 704  SPPNAFSIAEAGGAESALVIRRASGKPLTDG---IPTLFTYRGYWDIFDKRMAETTLSLE 760
                   +    G    +V + +SG    D    +  + T +G+ + F+ R    T  + 
Sbjct: 691  QLHTGLDLRHQVGPAFDVVYQLSSGSSQGDNGVLLAPMLTAKGFKEYFEPRSQRFT-EMA 749

Query: 761  QEDRWVLQIRAPGIADITSRELLLREVRRLYLTDYIRVWDEYLTDIRLADSRSLLQSIQM 820
              D+W L  RA        +  L   +R LY  DYI  W   L    +AD R L   + +
Sbjct: 750  MIDQWALGERAQLDYSDADQAALNERLRNLYSADYIDSWRRALNAFSVADFRDLDHGVTI 809

Query: 821  TRVLSTSESPMSRIIRGAARETDLLRNHDEAARGLLDQAQNRVASTRERIEQLIGQPDGS 880
               L+   +P+ R++      + LL        G+ D+A + V+                
Sbjct: 810  LEQLAGPAAPLHRLLETVRDNSSLL---SPVNVGVADEAPSPVSI--------------- 851

Query: 881  QRRNARVDRPESLV-DNHFEPLRRMVTAPKQGGQAP--IDATAALINELYTFLTATDTAL 937
               N++ ++ ++LV    F  L  M+ A    G+ P   D T A I  ++ +  A   + 
Sbjct: 852  ---NSKPEQQQALVIQRAFAGLSAMLHA---AGEKPSYYDETHAAIVAVHDYAKAVQGSP 905

Query: 938  RSGNIP----------PSSDAVTKVQAEAGRLPVPFQGMLNDLSATASSKAAAVTRQNIG 987
              G                D +  +Q  A  LP P    +  ++   +        + + 
Sbjct: 906  DRGKAALHAVHQRFSMTGHDPIGTLQRVATGLPEPINHHVRKVAHQTAQVLNVEALRELE 965

Query: 988  QSAAASIGSFCNQAIAGRYPFSRGSNRDVASGDFAQLFAPGGMMDDFFQKNLITQVDTSV 1047
            +   A + SF  Q +A RYPF   +  D +  DF   F P G +  F  + L  ++    
Sbjct: 966  RRWDAEVYSFFQQRLAERYPFVVRA-PDASLEDFEAFFGPNGRLQQFQDQYL--KLFLKD 1022

Query: 1048 NPWAFKRGVDGSAAGRSAYLDSFQKAQAIRDVFFSGMAGGRTPSFTLDIRPEDMDAALTQ 1107
            N  A + G+ G +  R+  ++  ++A  IR+ FF    G  +  F+  I P  + A    
Sbjct: 1023 NLEALQNGLQGRSLIRTDVIEQLERADRIRETFFD-QRGNLSVQFS--IEPLGLSANQRT 1079

Query: 1108 FTLDIDGQTVRYAHGPQAPSTVKWPGPRNSN-QVRLQVTTANGTPAGGIVTEGPWALHRL 1166
              LD+DGQ + Y HGP   + + WP     + +  L +   NG  +  +   GPW++ RL
Sbjct: 1080 SLLDLDGQLISYTHGPSQITGIVWPNTLGQHVRSNLTLLRQNGN-SSSLEYRGPWSMFRL 1138

Query: 1167 FDKASISSGSSPESFNATFDLQGKKVVLAVTANSVYNPLRLPQMNSFSCP 1216
              + ++ +G +  S + +F      +   + A   +NP+       F  P
Sbjct: 1139 LSRGAL-NGRTATSVDLSFKTGDGVMRYRLNAEKAFNPITQQPFKGFRLP 1187