Pairwise Alignments

Query, 1219 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 831 a.a., OmpA domain protein from Pseudomonas putida KT2440

 Score =  200 bits (509), Expect = 4e-55
 Identities = 184/651 (28%), Positives = 288/651 (44%), Gaps = 89/651 (13%)

Query: 25  FLIWIIGPAIAVGRYRPLEDEIVRIAVIALMFAIWLARLVYRKWRERRLNAQLLNQLRTP 84
           FL+W IG A     +  L   +  I V  L+ A ++  L     +   L   L +     
Sbjct: 25  FLVWAIGRAFG---FASLHSLLAGIGVFLLLSAGYVLLLYRGVGQHHNLEGLLRDDA--- 78

Query: 85  SKKEKEAKPEDAPEIKELQSGFTDATAILKNMRFGQGADGKPASRFSVFDRQYLYQLPWY 144
            +    A P D  E+  L+         L + +  +G   K A          LY LPWY
Sbjct: 79  DQAVLSAAPADREEVSLLRERLLQGIERLHSNK-PRGTSNKDA----------LYALPWY 127

Query: 145 IFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIGGTRNCDWWFTNEAVLIDTAGRYTT 204
           + IG P +GK+T ++ S L+FP A++ G   V G+GGTRNCDW+F++EAVL+DTAGRY  
Sbjct: 128 LVIGQPAAGKSTMILQSGLNFPYAEREG-VRVAGLGGTRNCDWFFSSEAVLLDTAGRYM- 185

Query: 205 HESNRETDEGEWKGFLELLKKFRPRQPINGAILTISIADLPLADDAQRARHAMALRKRLL 264
              N   + G+W+GFL+LL++ R R+P+NG I+++SIAD+       + R A  LR+R+ 
Sbjct: 186 ---NSPEEAGKWRGFLQLLRQHRQRRPLNGLIVSVSIADILHGSVEDQERVAKRLRERIQ 242

Query: 265 ELRNDLGIDFPVYVLVTKTDLLAGFNEYFGSLGRAERQQVWGFTFPIEGNAANKAAKGAA 324
           E    L +  P+Y++ TK DL+ GF  ++  L  A R +V G TF  +G           
Sbjct: 243 ESCALLEVRLPIYLVFTKCDLIPGFTAFYRQLDDAARGEVMGKTFSHKG----------- 291

Query: 325 PLKGGDLRERFHQEYRLLHQRLDERLPELLAAEPDPMRRAQ--AYLLPQQFASFEDILGT 382
             +  D  +RF      L +   +   + L  +   + R    AY  P + A+ +  L  
Sbjct: 292 -YEQADWGQRFSNAMDELTRYWGQMASQQLVQQDIQVTRRNDAAYRFPLELAALKPRLHQ 350

Query: 383 FLADVFNPSKFEAASMLRGVYFTSGTQEGTAFDRVMG--AIKRYLQVNAPPAPPPGPGKS 440
           F+  +   + ++ A MLRG YFT+  Q   A     G    +R+   +A      G   +
Sbjct: 351 FVDSLLRANPYQNAEMLRGFYFTAALQADEAQWGCHGQHVAERFALEHAEGTGTAGSQPA 410

Query: 441 -YFLKELLQQVIFRDAGVAG--TNLRWYRRKRAIDIAGYSVIGVLLVLFLGACVNSWRNN 497
             F+  L ++VI  D  +    T+    RR++A  +    +  ++L    G    + R  
Sbjct: 411 PLFINSLFRKVIIPDQHLVALYTSNHRERRRKAGWVGAAGLAALVLCSLWGWSYLNNRAT 470

Query: 498 KDYVAEVDGNAKAFNKAAARGELPTVVDSGGDIASSLLILDRLRDLPKSSH--FDVSDPP 555
              +A+    AKA ++AA+ G+            ++   LDRLR      H        P
Sbjct: 471 LASIADELAQAKADDQAAS-GQY-----------TAWRSLDRLRFWAAHYHEQHHAKGVP 518

Query: 556 LSYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSL------------------- 596
           L  R GLYQG +++      Y   L+ V+L   A  + ++L                   
Sbjct: 519 LGMRLGLYQGHEVEPLLRDRYFATLQNVMLKPTADNLTRTLYLLTTLKVYQRNTRELQPV 578

Query: 597 -------REASKND------AEYSYEALKAYLMLFDAERYDAD--FLQAWL 632
                   EA  +D      A +   AL  Y+ML   +R  AD  FL+A L
Sbjct: 579 SGIDSVEAEALPHDNRAQSIANFGKAALDTYVMLSPGQREHADPAFLKAHL 629