Pairwise Alignments

Query, 304 a.a., Urea ABC transporter, permease protein UrtB from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 5e-28
 Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 6   MMNIGLMQGFAGLSLFAVLLLMGLGLAIIFGQMGVINMAHGEFMTIGAYSIYLAARVTES 65
           M  I L Q   GL+L +V  L+ +G  +++G +G+IN AHGE   I AY     A ++ +
Sbjct: 1   MDGIFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAY----LAAISLA 56

Query: 66  LAPEFMPYYFPIAIALAFVFAFIVGWIVEWALIRHLYK-----RPLDTLLATWGVSLGLQ 120
           L   F    FP+ +    +F  +V  +  + + R  YK       L  L++  G+SL LQ
Sbjct: 57  LLAYFGVESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQ 116

Query: 121 QIFRTFIGPKEVS-PTLPEWLMGSWTPHEGLDIPINGLFVLVLTALVTGGVLVALHKSRW 179
              +   G ++   PTL E  M        + +    +F+LV   +  G +   +  ++ 
Sbjct: 117 NYAQISQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKL 176

Query: 180 GLRVRATVANRTMANATGIDTRKTDRLTFAIGCGIAGVAGAAFT-TIGSTGPTSGSLYIV 238
           G   RAT  +R MA+  GI+T +     F IG  +A +AG   T   G+    +G +  +
Sbjct: 177 GRMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGI 236

Query: 239 DAFLVVTFGGAASLFGTVVSAFGIAQTQSVSEFFMTGSMAKVLTLSLIVFILMLRPQGL 297
            AF     GG  SL G ++    +  ++S+    +      V + SL+V IL+ RPQGL
Sbjct: 237 KAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGL 295