Pairwise Alignments

Query, 467 a.a., AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination from Variovorax sp. SCN45

Subject, 506 a.a., predicted bifunctional enzyme and transcriptional regulator (RefSeq) from Escherichia coli BW25113

 Score =  357 bits (917), Expect = e-103
 Identities = 210/462 (45%), Positives = 279/462 (60%), Gaps = 20/462 (4%)

Query: 1   VRSAIQNAGLEYPNNKKIVVNLAPADLPKDSGRFDLPIALGILAASGQIDNARLAGHEFA 60
           VRSAI N+G EYP  KKI +NLAPADLPK+ GR+DLPIA+ +LAAS Q+   +L  +E  
Sbjct: 49  VRSAIINSGYEYPA-KKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELV 107

Query: 61  GELSLSGELRPVRGALAMALALHTRGVATRLVLPLDSAHEAALVPGSEVYGARHLLDVVR 120
           GEL+L+G LR V GA++ A      G   ++++  D+  E  L+ G     A HL  V  
Sbjct: 108 GELALTGALRGVPGAISSATEAIKSG--RKIIVAKDNEDEVGLINGEGCLIADHLQAVCA 165

Query: 121 QFVVDTEAASQWPDPPPDGWARVHAAPGASAPRYADLADVKGHAGAKRALEIAAAGGHSL 180
              ++ + A + P P              S     DL+DV G    KR LEI AAGGH+L
Sbjct: 166 --FLEGKHALERPKP----------TDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNL 213

Query: 181 LMMGEPGSGKSMLAQRFAGLLPAMSIDEALESAAVASL-GGRFATERWMLRPTSAPHHTS 239
           L++G PG+GK+MLA R  GLLP +S +EALESAA+ SL       ++W  RP  +PHH++
Sbjct: 214 LLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSA 273

Query: 240 SAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFARSALEALREPLETGTITIARAARSAE 299
           S  A+VGGG+ P PGEIS AH+GVLFLDE PEF R  L+ALREP+E+G I ++R      
Sbjct: 274 SLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333

Query: 300 FPARFQLIAAMNPCPCGYLGSTKSKACRCTPDQISRYQGKLSGPLLDRIDLHIEVPAVSA 359
           +PARFQL+AAMNP P G+     +   RCTP+Q  RY  +LSGP LDR DL +E+P    
Sbjct: 334 YPARFQLVAAMNPSPTGHYQGNHN---RCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390

Query: 360 QQL-LDAPPGESTESIRSRVIVARERAMQRQGYANQSLQGSAIDKHAGLDDAARKFMFNA 418
             L     PGES+ +++ RV+ ARER  +RQ   N  L    I +   L+     ++   
Sbjct: 391 GILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGT 450

Query: 419 AAKLGWSARSTHRALKVARTIADLGSAEAVQVEHLAEAVQYR 460
              LG S R+  R LKVARTIAD+  ++ +  +HL EAV YR
Sbjct: 451 LIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR 492