Pairwise Alignments

Query, 396 a.a., Urea ABC transporter, permease protein UrtC from Variovorax sp. SCN45

Subject, 643 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  109 bits (273), Expect = 2e-28
 Identities = 85/356 (23%), Positives = 149/356 (41%), Gaps = 41/356 (11%)

Query: 11  YQLGSLLLLVLLLAVVLPLSLDIFRLNLVGKYLTYAFVAVGLVMVWGYGGVLSLGQGVFF 70
           Y + + +L ++L A+ L      + + L+   L  A  A  L  + G  G+ S G   +F
Sbjct: 322 YLIAAAVLALMLAALPLLTVNSPYTMVLMIDLLIAALFATSLHFIMGPAGMHSFGHAAYF 381

Query: 71  GIGGYAMAMFLKLEASDPVTTKIQSTPGIPDFMDWNQITELPALWLPFKSLPLSLALVVL 130
           G+G Y  A+ ++                                      LP+ +AL+V 
Sbjct: 382 GLGAYGAALLVRS-----------------------------------LHLPMEVALLVA 406

Query: 131 APMALAWLVSFAMFKRRVGGVYFAIITQAVALICTVLIIGQQGYTGGVNGMTDLKTLLGW 190
             +A    + +  F  R+ GVY A++T A A I   +      +TGG NG+T +     W
Sbjct: 407 PVVAALGALVYGWFAVRLSGVYLAMLTLAFAQITWAITYQWDSFTGGSNGLTGV-----W 461

Query: 191 DTRTDGAKYVLYYVCVGLLVLSILLCRWIQTSKLGTLLLAMRDKEDRVRFSGYDVSNFKV 250
            +     K   Y++ + L+   +   R +  S  G  L A RD   R    G DV   + 
Sbjct: 462 PSEWLSNKQAYYWLTLVLVGAGVWWLRRVLFSPFGYALRAGRDSVLRADAIGIDVKRMQW 521

Query: 251 FIFCLAAGLSGIGGAMFALQVGFMSPSFVGIVPSIEMVIFCAVGGRMSLVGAVYGALLVN 310
             F +A  ++G+ GA++A   G +SP  + +  S++ ++   +GG  +L G V GA+   
Sbjct: 522 AAFVIAGTVAGLAGALYAFSKGSISPESLSVGKSVDGLVMVLLGGIQTLAGPVVGAVTFT 581

Query: 311 AGKTLFSESFPDLWLFLMAGLFIGVTMAFPMGLAGVWEEKIRPWWKSRRQALREAA 366
                 + +  D W  ++  + + + + FP G+AG  ++    W   R  A  E A
Sbjct: 582 WLHDTVARN-TDYWRAMLGAIILILVLLFPQGIAGSIKQLAERWRAPRHDADAEKA 636



 Score = 44.7 bits (104), Expect = 8e-09
 Identities = 83/352 (23%), Positives = 137/352 (38%), Gaps = 81/352 (23%)

Query: 47  FVAVGLVMVWGYGGVLSLGQGVFFGIGGY-AMAMFLKLEASDP-------VTTKIQSTPG 98
           FVA GL +++G   +++   G FF +G Y A  +  KL +S             +     
Sbjct: 22  FVAAGLSLIFGVTRIVNFAHGSFFMVGIYVAYTLVDKLGSSLGFWPALLIAAVAVGVLGA 81

Query: 99  IPDFMDWNQITELPALWLPFKSLPLSLALVVLAPMALAWLVSFAMFKRRVGGVYFAIITQ 158
           + + +   +I + P L+     L  + ALV++   A+ WL           G    +  +
Sbjct: 82  LIEVVLLRRIYKAPELF----QLLATFALVLVIKDAVLWL----------WGPDELLGPR 127

Query: 159 AVALICTVLIIGQQGYTGGVNGMTDLKTLLGWDTRTDGAKYVLYYVCVGLLVLSILLCRW 218
           A  L  +V I+G+Q                          Y L+ + VG LVL ++    
Sbjct: 128 APGLKGSVEILGRQF-----------------------PSYDLFLIVVGPLVLGLVWLLL 164

Query: 219 IQTSKLGTLLLAMRDKEDRVRFSGYDVSNFKVFIFCLAAGLSGIGGAM--------FALQ 270
            +T + GTL+ A     + V   G + +     +F L A L+G+GGA+          + 
Sbjct: 165 TRT-RFGTLVRAATQDREMVSALGVNQAWLFTAVFALGALLAGLGGALQLPREPATLEMD 223

Query: 271 VGFMSPSFVGIVPSIEMVIFCAVGGRMSLVGAVYGALLVNAGKTL-----------FSES 319
           +  +  +FV +V          VGG  SL GA   ALL+   K +              S
Sbjct: 224 LNTIGAAFVVVV----------VGGMGSLPGAYVAALLIAEIKAVCIWLGVVQIFGIDVS 273

Query: 320 FPDLWLFLMAGLFIGVTMAFPMGLAGVWEEKIRPWWKSRRQALREAAVKPPA 371
           F  L L +   +   V +  P GL G      RP   SR   ++E  ++ P+
Sbjct: 274 FSKLTLMVDFLVMAIVLVWRPWGLFG------RPQAPSRYVGMQEEPLRRPS 319