Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

 Score =  338 bits (866), Expect = 4e-97
 Identities = 211/536 (39%), Positives = 308/536 (57%), Gaps = 43/536 (8%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L LR+ Q L +TPQLQQ+IRLLQLSTL+L QE+++ L+ NP LER       +E G
Sbjct: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-------QEEG 53

Query: 61  LDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDWEGDG 120
            D  +     D + +    D   PS        ET+ T  + +         E DW  + 
Sbjct: 54  DDFDNADPLADNIEQKPNSDVQEPSYQ------ETAPTVDNLE---------EGDWN-ER 97

Query: 121 TVDMAPDDSEWGSDAPARQNNL--GDDERADATELARSQESLQSFLHRQALSLRLSENDS 178
             +  P D+ W        ++L   DD+  D T      ESLQS L  Q     +S+ D 
Sbjct: 98  IPNELPVDTAWEDVYQTSASSLPSNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDR 157

Query: 179 AALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGAR 238
                LI+ +N+ GYL+++L  +      + + + D++    +  L  +Q  EP G+GAR
Sbjct: 158 LIAVTLIDCINNQGYLDETLEEILEAFDPELDIELDEI----EAVLHRIQQFEPAGIGAR 213

Query: 239 DLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNEE 298
            L ECL +QLR L A+     E  R         +    ++LL  RD+ +L    +  E+
Sbjct: 214 TLSECLLLQLRQLPAKTAWLTEAQR---------LVTDYIDLLGSRDYSQLMRRMKLKED 264

Query: 299 LVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVH 358
            +R  ++++  L P+PG +    E   V+PDVIV K     N ++ V LN E +PRLRV+
Sbjct: 265 DLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRKD----NERWLVELNQESVPRLRVN 320

Query: 359 DIYAGALK-SHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGEL 417
             YAG ++ +     +  +  +LQEARWFIK++Q R +T+++V+  IVE Q+ +  +G+ 
Sbjct: 321 PQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLEYGDE 380

Query: 418 AMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAV 477
           AM+PLVL +IA+ +G+HESTISRVTT K+M TP G  ELKYFF S + T  GG  SSTA+
Sbjct: 381 AMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGECSSTAI 440

Query: 478 RALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL 533
           RA+IK+ V++E+ KKPLSDS+I+ +L+ QGI+ ARRTVAKYRE+L IAP++ RK L
Sbjct: 441 RAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 496