Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  235 bits (599), Expect = 3e-66
 Identities = 174/532 (32%), Positives = 266/532 (50%), Gaps = 48/532 (9%)

Query: 5   LSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLER-TAEEAAREEFGLDA 63
           L +R SQ L +TPQLQQ+I+LL LS LE+   V   L++NP LE+  A++  RE  G+D 
Sbjct: 7   LDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGREGSGVDR 66

Query: 64  -VDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADSDGPAAEIAEREPDWEGDGTV 122
            V+ P    E   + +        + S    +        DGPA    +R     G G++
Sbjct: 67  EVEAPTLAAETGASDDLIAQGLGGADSPLDVDHGAETFIDDGPA----DRMGAGSGSGSL 122

Query: 123 DMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLSENDSAALR 182
           DM    S             G  E  D    A +  SLQ  L  QA S  LS  D     
Sbjct: 123 DMLGGGS-------------GSGEAVDFDSFANAAPSLQEHLMDQARST-LSGMDLLIAT 168

Query: 183 FLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGARDLGE 242
            LI  +++ GYLE +L   A GL           +   +  L ++ S +P GVGAR L E
Sbjct: 169 QLIGQISEAGYLEANLLQTAHGLGVP--------LFTVEAVLEVIHSFDPTGVGARSLAE 220

Query: 243 CLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNEELVRL 302
           CL++Q +              A  Y   I      ++LLA+    +L  +   +EE +  
Sbjct: 221 CLALQAK-------------EANRYDPCIQRLLANLDLLAKGALPQLRRICGVDEEDLAD 267

Query: 303 ALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDIYA 362
            ++ +   +PKPG RF       V PD+ V++T  G  ++    +N   +PR+ V+  Y 
Sbjct: 268 MIRELRGYDPKPGLRFASDSATPVTPDLFVSRTREGWGIE----VNSATLPRVLVNRTYY 323

Query: 363 GALKSH-KGEGSQA-LSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGELAMR 420
             L    + + S+A L+  L  A W +K + QR  TI++V++ IV +Q+ +F +G   ++
Sbjct: 324 VELAGGPQDKASKAWLADCLASANWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLK 383

Query: 421 PLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETG-GNASSTAVRA 479
           PL LR +AD + +HEST+SRVT+ KY++ P G  ELKYFF S +    G G  S+ AV++
Sbjct: 384 PLTLRAVADAIEMHESTVSRVTSNKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKS 443

Query: 480 LIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRK 531
            IK  + +E     LSD  + ++L+ +G++ ARRTVAKYRE++ I  +  R+
Sbjct: 444 HIKALIGAEEAHAILSDDTLVDLLRAKGMDIARRTVAKYRESMGIGSSVQRR 495