Pairwise Alignments

Query, 533 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  352 bits (903), Expect = e-101
 Identities = 225/536 (41%), Positives = 321/536 (59%), Gaps = 43/536 (8%)

Query: 1   MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFG 60
           MK  L L++ Q L +TPQLQQ+IRLLQLSTL+L QE+++ L+ NP LER       +E G
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-------QEDG 53

Query: 61  LDAVDTPVQRDEVAEAGEGDFTPPSASTSTASTETSTTAADS--DGPAAEIAEREPDWEG 118
            D  ++    D +A+  E     P+A     S + ST +AD+  DG   E +ER P+   
Sbjct: 54  EDFDNS----DPMADNAENK---PAAEVQDNSFQESTVSADNLEDG---EWSERIPN--- 100

Query: 119 DGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESLQSFLHRQALSLRLSENDS 178
           +  VD A +D    S +    N   DD+  D T    + ESLQS L  Q     +S+ D 
Sbjct: 101 ELPVDTAWEDIYQTSASSLPSN---DDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDR 157

Query: 179 AALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDDLVHHFQVALGLLQSLEPVGVGAR 238
                LI+S+N  GYLED+L  + +G   + + + D++    +  L  +Q  EP GVGAR
Sbjct: 158 LIAVTLIDSINGQGYLEDTLEEICAGFDPELDIELDEV----EAVLHRIQQFEPAGVGAR 213

Query: 239 DLGECLSIQLRALAAEDEDGEEEDRAQVYKTAIAICKQPMELLARRDFKRLATLTRSNEE 298
           +LGECL +QLR L A      E  R         +    ++LL  RD+ +L    +  E+
Sbjct: 214 NLGECLLLQLRQLPATTPWMTEAKR---------LVTDFIDLLGSRDYSQLMRRMKIKED 264

Query: 299 LVRLALQVIARLEPKPGRRFVDVERNIVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVH 358
            +R  ++++  L P+PG +    E   V+PDVIV K       ++ V LN E +PRLRV+
Sbjct: 265 ELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRKDSD----RWLVELNQEAIPRLRVN 320

Query: 359 DIYAGALK-SHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAIVERQKSYFVHGEL 417
             YAG ++ +     +  +  +LQEARWFIK++Q R +T+++V+  IVE Q+ +  HG+ 
Sbjct: 321 PQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDE 380

Query: 418 AMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAV 477
           AM+PLVL +IA+ +G+HESTISRVTT KYM TP G  ELKYFF S + T  GG  SSTA+
Sbjct: 381 AMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTSEGGECSSTAI 440

Query: 478 RALIKQFVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL 533
           RA+IK+ V++E+ KKPLSDS+I+ +L+ QGI+ ARRTVAKYRE+L IAP++ RK L
Sbjct: 441 RAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 496