Pairwise Alignments

Query, 1042 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1052 a.a., probable copper efflux transporter, CzcA family from Pseudomonas putida KT2440

 Score =  566 bits (1458), Expect = e-165
 Identities = 361/1042 (34%), Positives = 567/1042 (54%), Gaps = 31/1042 (2%)

Query: 1    VIDRLIAFSLTQRVFVMVLVAALVGFGAYALSNLPIEAFPDVQDVQVRVISQLPGQAPED 60
            +I++LI +S++ R+ V++    L+ +G ++L +LPI+A PD+ D QV + +  PGQAP+ 
Sbjct: 1    MIEKLIRWSVSNRMLVLLATLFLMAWGIFSLRSLPIDALPDLSDAQVIIRTSYPGQAPQI 60

Query: 61   MERTVTLPIEREVSGIPKLSNVRSVTMTGLSIVTLTFADGTDDYFARQQVTEKLSTVT-- 118
            +E  VT P+   +  +P    VR  +  G S V + F DGTD Y+AR +V E LS V   
Sbjct: 61   VENQVTYPLTTTMLSVPGAKTVRGFSAFGDSFVYVIFEDGTDLYWARSRVLEYLSQVQSR 120

Query: 119  LPTGVQPQLAPLSTAVGEVYRYT-IEGGGLTD-AQLRTLQDWTVRPFLRMTPGVADVVSF 176
            LP   +P L P +T VG +Y+Y  ++  G  D AQLR+LQDW +R  L+  P VA+V S 
Sbjct: 121  LPATAKPALGPDATGVGWIYQYALVDRSGRHDLAQLRSLQDWFLRFELKTVPDVAEVASI 180

Query: 177  GGAITEYQVEVDPLALRKYQVTLDQLNQAIGNGNGSAGGGLMRQGDASLVVRSAGLFASL 236
            GG + +YQV +DPL +    +T  ++  AIG  N   GGG++ QG+A  +VR++G   +L
Sbjct: 181  GGMVKQYQVVLDPLRMASLGITQGEVANAIGKANQETGGGVLEQGEAEFMVRASGYLKTL 240

Query: 237  ADIRSVVIA-SRQGRAITVADVAEVRAGERPRFGIVAVDARDSVVEGIVSMTKGGNPAKI 295
             D R++ +  +  G  + + DVA V+ G   R GI  +D     V G+V +  G N  + 
Sbjct: 241  DDFRAIPLRLAANGAPVMLGDVARVQLGPEARRGIGELDGEGEAVGGVVILRSGKNAREA 300

Query: 296  NAELKQRIGQLQAKLPPGVRIVPVYDRTELVRHTVSTVAENLVVGALLVIAVLIVFLSSW 355
               +K ++  L+  LP GV +V  YDR++L+   V  ++  L+   ++V  V   FL   
Sbjct: 301  ITHVKDKLETLKKSLPAGVELVTTYDRSQLIDRAVDNLSHKLIEEFIVVALVCAAFLWHL 360

Query: 356  RAALIVATVIPLALLFAFILMNARGVSANLISLG--AVDFGIIIDSAVVIVEALMVRLAA 413
            R++L+    +P+ +L A I+M  +G++AN++SLG  A+  G ++D+AVV++E    R+ A
Sbjct: 361  RSSLVAIVSLPVGVLIALIIMRHQGINANIMSLGGIAIAIGAMVDAAVVMIENAHKRVEA 420

Query: 414  ---KSVGDIASPEARHQRMGVLHRTLSDLAHPVLFSKAIIILAFVPIFTFQRVEGKIFTP 470
               +  G +    A H R  V+     ++   + FS  II L+FVP+FT Q  EG++F P
Sbjct: 421  WHARYPGQVLRG-AEHWR--VMTDAAVEVGPALFFSLMIITLSFVPVFTLQAQEGRLFAP 477

Query: 471  VALTLSFALLGAVLLTFTLLPTLLSYALQRGTLAEKHKPWLDWLQMRYRKLVMFTMRRGR 530
            +A T ++A+  A  L  TL+P L+ Y ++    AE+  P    L   YR  +   +RR  
Sbjct: 478  LAFTKTYAMAAAAGLAVTLVPVLMGYWIRGPLPAEERNPLNRGLIRVYRPALEVVLRRPW 537

Query: 531  VTLLLSAVPVALALLLAPRLGSEFLPKLDEGNI-WLTVTLPTSAALETTKEVEHVVRAKL 589
            +TLL +   +  +L     LG EFLP LDEG++ ++   LP  +A + ++ ++   R  +
Sbjct: 538  MTLLGALAILLSSLWPLSHLGGEFLPPLDEGDLLYMPSALPGLSAQKASELLQRTDRL-I 596

Query: 590  LAYPEVARVIAQVGRPDDGSDPKGPNNLEILVDLKPREQWRFA-SKEDLVASMSAQLDGI 648
               PEVA V  + GR +  +DP      E +V LKP++QWR   S E LV  +   +  +
Sbjct: 597  RTVPEVASVFGKAGRAESATDPAPLEMFETIVRLKPKDQWRPGMSSEKLVEELDRTVR-V 655

Query: 649  PGISANFSQVIQDNVEEALSGFRGEIVAKIIGNNLDILDDKGAEVASVIKGIRGATDVDA 708
            PG++  +   I++ ++   +G +  I  K+ G++L  +D     +  V K + G T   A
Sbjct: 656  PGLTNIWIPPIRNRIDMLATGIKSPIGVKVAGSDLAQIDHTTLAIERVAKSVPGVTSALA 715

Query: 709  TRIGGQTEVVITPDRARLARYGMAINDVNTLVNQAMSGTSVTGFYDADKRFDVVVRVGDR 768
             R+ G   V +  DR   ARYG+ I DV  +V  A+ G ++    +   R+ + VR    
Sbjct: 716  ERLTGGRYVDLDIDRQAAARYGLNIADVQAIVAGAIGGETIGETVEGLARYPISVRYPRE 775

Query: 769  HRNSVDAIAGLQLAVPGTQSGNGPGTIALGDVATIEVKQGASRIFRESGSRMVIVKVNLL 828
             R+SVDA+   QL V   Q G     I LG VA + + +G   +  E+      V +++ 
Sbjct: 776  WRDSVDALR--QLPVYTAQGGQ----ITLGTVARVGIAEGPPMLKSENARPSGWVYIDVR 829

Query: 829  GRDQGSFVEEAQRTVAEQVKLPPGYELTWGGQFENSQRAAKRLMVIVPLTALLIFSLLFW 888
            GRD  S V + +R V  +VKL PG  L++ GQFE  +RA  RL  +VP T  +IF LL+ 
Sbjct: 830  GRDLSSVVADLRRAVDREVKLNPGMSLSYSGQFEYLERANARLAWVVPATLAIIFVLLYL 889

Query: 889  AFRSVRLAGLVLGMIPFTLVGGLAALALADLHLSVSAAVGFIAVAGISVQNGVILV---- 944
             F  +  A L++G +PF L GG+  L L   +LSV+  VGFIA+AG++ + GVI++    
Sbjct: 890  TFGRMGEALLIMGTLPFALTGGVWLLYLMGFNLSVATGVGFIALAGVAAEFGVIMLIYLN 949

Query: 945  ----EEVTQRVRDGSAVARAIVEGAAVRLRPILMTALMAGLGLLPAALSHGIGSETQRPF 1000
                E          A+  AI EGA  R+RP  MT  +   GLLP   S+G GSE     
Sbjct: 950  NAWAERQANSEHTQDALLEAIREGAVQRIRPKAMTVAVIVAGLLPILWSNGTGSEVMSRI 1009

Query: 1001 ACVIVGGIVSGTLFTLLVLPLA 1022
            A  +VGG+++  L +L V+P A
Sbjct: 1010 AVPMVGGMLTAPLLSLFVIPAA 1031