Pairwise Alignments

Query, 323 a.a., Ku domain protein from Variovorax sp. SCN45

Subject, 277 a.a., DNA repair protein from Pseudomonas simiae WCS417

 Score =  310 bits (794), Expect = 3e-89
 Identities = 157/274 (57%), Positives = 202/274 (73%), Gaps = 5/274 (1%)

Query: 10  PRVLWKGAISFGLVHIPVALYSATTDHGIDFDWLDKRTMDPVGYKRINKKTGKEIAREQI 69
           PR +WKGAISFGLVHIPV+L SAT+  G+DFDWLDKR+MDPVGYKRINK TGKE+ ++ I
Sbjct: 2   PRAIWKGAISFGLVHIPVSLVSATSSQGVDFDWLDKRSMDPVGYKRINKTTGKEVTKDNI 61

Query: 70  VKGIEYEDGEYVVLSDKEIAAAYPKTTQTIEIETFVPADGIPFVYLERPYYVAPINRGAK 129
           VKG+ +E G YVVLS++EI +A+PK+TQTIEI  FV +D IP   ++ PY++AP  RG K
Sbjct: 62  VKGVAFEKGRYVVLSEEEIRSAHPKSTQTIEIIAFVASDQIPLQNIDTPYFLAPDKRGGK 121

Query: 130 VYALLRETLQRSGRVGVARVVIQTKQHLAVLVPAGPGLVLNLLRWGADIRPWTDLPLPSE 189
           VYALLRETL+++ +V +A VV+ TKQHLA L+P    LVL +LRW A++R   +L L S 
Sbjct: 122 VYALLRETLRKTRKVALANVVLHTKQHLAALMPLDSALVLVMLRWPAEVRSLDELELGS- 180

Query: 190 DAKKAGLSERELKMAKELVDDMSTDWDPDEFKDEFKDEILRLVDKKVKAGQTETVTQPEP 249
           D  K  L++ EL MAK LVDDMS DW PD+++D F+++I+ LV KK KAG+ E V   + 
Sbjct: 181 DVTKPSLAKGELDMAKRLVDDMSADWQPDDYRDSFQEKIMALVAKKAKAGKIEDVETSKD 240

Query: 250 EESQSTEGRGAKIIDLTELLQRSLRGKGGKTAKA 283
            E    E + A +IDLTELL+RSL GK  K   A
Sbjct: 241 SE----ERKSADVIDLTELLKRSLAGKPTKKPAA 270