Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  847 bits (2188), Expect = 0.0
 Identities = 454/831 (54%), Positives = 548/831 (65%), Gaps = 38/831 (4%)

Query: 10  KALARYHGKRDFSRTPEPKTGGRAGK---GVLSFVIQKHHASHLHYDFRLELDGTLKSWA 66
           K L+ Y+ KRDF  T EP     AGK     LSFVIQKH A +LHYDFRLELDG L SWA
Sbjct: 3   KPLSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWA 62

Query: 67  VPKGPCLDPAVKRMAVHVEDHPISYAGFEGTIPPKQYGAGTVIVWDRGDWLPDGDARKSL 126
           VPKGP LDP+ KR+AVHVEDHP+SY GFEG+IP  QYGAG VIVWDRG W P  + RK+ 
Sbjct: 63  VPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKAY 122

Query: 127 AAGKLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARALDDYDVLEEQPASV 186
           AAGKLKF L GEKL G W LVR   KG    E WLLIKE+D +AR+ DDYD+++ QP SV
Sbjct: 123 AAGKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSV 182

Query: 187 LSGRGVDDVAQPAKKMPAKAPAKVQAKAPKKVALPATLQPQLATLAASPPASPGDWLYEL 246
           LS   V                K +AKA +K ALP    PQLATL    P   GDW YE+
Sbjct: 183 LSDASV-------------GKPKTRAKA-RKTALPEQFTPQLATLVDRAPE--GDWQYEI 226

Query: 247 KFDGYRLLARIDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEITVEGENGAP 306
           KFDGYR+LARI  G+VR FTRNGHDWT  LP   +AL  L    +WLDGE+     +G P
Sbjct: 227 KFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWLDGEVVSLNGDGLP 286

Query: 307 DFQALQNAFDRGATSAIVYWLFDAPFLDGEDLRELPVEERRARLAKLLGKKPPAPLRLSE 366
           DFQALQNAFD G +  IVY+LFDAPFL+GED R+ PVEERRA L + L       LR SE
Sbjct: 287 DFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEALAGSRSTLLRYSE 346

Query: 367 AFDAAPRDLLASSARIGFEGIVCKRKGSPYVPRRSPDWIKLKNQQRQEFVIGGYTAPKGA 426
           AF A  RD+  S+  +  EG++ KR GSPYV RRS DWIKLK +  QEFVI GYT P+G+
Sbjct: 347 AFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGS 406

Query: 427 RAGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADIKARLDRLATDDCPF-----SPQP 481
           R+GFGALLL V+++ TG L Y G VGTGFD   L  I A+L  L  +  P      S Q 
Sbjct: 407 RSGFGALLLAVNND-TG-LVYAGRVGTGFDQAALKAIYAQLTPLECETSPLAKPLSSAQA 464

Query: 482 RGVKAQWVKPSLVAEVSFGEWTREDRVRQAVFQGLRADKPARDIRRERPKEAGEIEADAS 541
           RGV   WVKP+LVA+V F EWTRED VRQA F GLR DKP   +  E+P+        + 
Sbjct: 465 RGV--HWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPRTV-----HSK 517

Query: 542 SPAKKKGKPAPMAQKITHADRVIDKHSGITKGQLAAYYDSVATLMLPHLRGRPVSLVRAP 601
            P KK  +       ITH DRVIDKHSG  K QLA +YD+++  +LP LR RPVSL+RAP
Sbjct: 518 KPVKKTSRDV----NITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRAP 573

Query: 602 EGVGGELFFQKHVQNREIPGVRLLDPALDPGHEPLLQIDTRTGLLGAAQMNVIELHTWNA 661
           EG+ GE FFQKH +   IP ++ LD +LDPGH  L++ID    L+GA QM  +E HTW A
Sbjct: 574 EGIEGEQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGA 633

Query: 662 TSRAIGKPDRMTFDLDPGEGVAWPRIQEAAMLVRTLLDELGLPSFLKTSGGKGLHVVVPL 721
           TS  I  PD    DLDP   + W  + EAA L  ++LDELGL +F+KTSGGKGLH++VPL
Sbjct: 634 TSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPL 693

Query: 722 RRQYDWDAVKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYLRNGFGATTVSAWSA 781
            R+ +W+ VK F++ +   + E +P RF A SGP+NRVGK+F+DYLRN  GA+TV+A+S 
Sbjct: 694 ARRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSV 753

Query: 782 RSRPGLGVSVPLAWEELPVVTAADQWNVGNAAERF-AIGNKPWAAMERSRK 831
           R+RPGL VSVP++ EEL  +  A QW V N  +R  A+   PWA     +K
Sbjct: 754 RARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGYANRQK 804