Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 240 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Sphingobium sp. HT1-2

 Score =  186 bits (473), Expect = 1e-51
 Identities = 103/210 (49%), Positives = 127/210 (60%), Gaps = 6/210 (2%)

Query: 12  LARYHGKRDFSRTPEPKTGGRAGK-GVLSFVIQKHHASHLHYDFRLELDGTLKSWAVPKG 70
           LA Y+ KRDFSRT EP+  G+ GK G  SFV+QKH A+ LH+DFRLE+DG LKSWAV KG
Sbjct: 7   LAPYNAKRDFSRTREPR--GKVGKTGGRSFVVQKHAATRLHWDFRLEIDGVLKSWAVTKG 64

Query: 71  PCLDPAVKRMAVHVEDHPISYAGFEGTIPPKQYGAGTVIVWDRGDWLP-DGDARKSLAAG 129
           P LDPA KR+AV  EDHP+ Y  FEG IP  +YG G+V++WDRG W P  G     L  G
Sbjct: 65  PSLDPADKRLAVRTEDHPLDYGAFEGNIPKGEYGGGSVMLWDRGTWEPIPGKRADDLKDG 124

Query: 130 KLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARALDDYDVLEEQPASVLSG 189
            L F L GE++ G W LVRM G+  E  E WLL K  D  A   D  D++     S+L+ 
Sbjct: 125 HLHFILHGERMKGEWLLVRMKGRPSEKRENWLLRKVEDDHAS--DSEDLVGHALTSILTA 182

Query: 190 RGVDDVAQPAKKMPAKAPAKVQAKAPKKVA 219
           R +  +        +   AK +A A K  A
Sbjct: 183 RSMAQIQADRDGTQSLKGAKGKAFADKMQA 212