Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  818 bits (2113), Expect = 0.0
 Identities = 437/834 (52%), Positives = 547/834 (65%), Gaps = 14/834 (1%)

Query: 10  KALARYHGKRDFSRTPEPKTGGRAGKGV--LSFVIQKHHASHLHYDFRLELDGTLKSWAV 67
           K L  Y  KRDF+ TPEP    + GK    L F IQKH ASHLHYDFRLELDGTLKSWA+
Sbjct: 3   KPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSWAI 62

Query: 68  PKGPCLDPAVKRMAVHVEDHPISYAGFEGTIPPKQYGAGTVIVWDRGDWLPDGDARKSLA 127
           PKGP LDP V+R+AVHVEDHP+ YA FEG IP   YGAG VIVWDRG W P+GDA ++ A
Sbjct: 63  PKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEAYA 122

Query: 128 AGKLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARALDDYDVLEEQPASVL 187
            GKL+F L GEKL G W L R H  G +  E W+L+K  DA+A +  +Y ++E  P SVL
Sbjct: 123 KGKLRFRLLGEKLGGVWNLFRTHLAGKK--EQWMLVKSHDAQACSETEYSIVEALPDSVL 180

Query: 188 SGRGVDDVAQPAKKMPAKAPAKVQAKAPKKVALPATLQPQLATLAASPPASPGDWLYELK 247
           S R +      AKK  A   ++ +A   +   LPA LQPQLATL  SPP+  GDW YE+K
Sbjct: 181 SERTLVPCKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPS--GDWRYEVK 238

Query: 248 FDGYRLLARIDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEITVEGENGAPD 307
           FDGYR+LARI+   +R FTRNGHDW++K+P    AL  L   +AWLDGE+ V  ENG  D
Sbjct: 239 FDGYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMAD 298

Query: 308 FQALQNAFDRGATSAIVYWLFDAPFLDGEDLRELPVEERRARLAKLLGKKPPAPLRLSEA 367
           FQALQNAFD      I Y+LFD PFL G+DLR+LP++ RR  L +LL       ++ S  
Sbjct: 299 FQALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHCDVIKYSAD 358

Query: 368 FDAAPRDLLASSARIGFEGIVCKRKGSPYVPRRSPDWIKLKNQQRQEFVIGGYTAPKGAR 427
           FD   + LL S+ R+  EG++ KR  S Y  RRSPDWIKLK +QRQEFVI GYT PKG+R
Sbjct: 359 FDEPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSR 418

Query: 428 AGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADIKARLDRLATDDCPFSPQPRGVKAQ 487
           +GFGALLL +HD  +G+LRY G VGTGF+A  LA I ARL  L          P G +A+
Sbjct: 419 SGFGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARPALPSPPAGAEAR 478

Query: 488 ---WVKPSLVAEVSFGEWTREDRVRQAVFQGLRADKPARDIRRERPKEAGEIEADASSPA 544
              W++P L+AEV+F + TR+  VR +VF GLR DK A  I  ER   A  + ++ +  A
Sbjct: 479 GVHWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTV-SNRNKQA 537

Query: 545 KKKGKPAPMAQKITHADRVIDKHSGITKGQLAAYYDSVATLMLPHLRGRPVSLVRAPEGV 604
           K       +  ++TH DRVID  +G+TK ++A YY  ++  +LP L+ RPV+LVRAP+G+
Sbjct: 538 KASENLGEL--RLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGL 595

Query: 605 GGELFFQKHVQNREIPGVRLLDPALDPGHEPLLQIDTRTGLLGAAQMNVIELHTWNATSR 664
           GGELFFQK+     IP V   + A     +  + I+    LLGA QMN++ELHTWNAT +
Sbjct: 596 GGELFFQKNAGQLYIPNVLSYEKA--EAGQAAMVINRADTLLGAVQMNMLELHTWNATDK 653

Query: 665 AIGKPDRMTFDLDPGEGVAWPRIQEAAMLVRTLLDELGLPSFLKTSGGKGLHVVVPLRRQ 724
              KPDR   DLDP   + W  + EA  L  TLLDELGL  FLKTSGGKG+HVVVPL R+
Sbjct: 654 DFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLTRR 713

Query: 725 YDWDAVKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYLRNGFGATTVSAWSARSR 784
             WD VK FS A+V +LA+  P R  A SGP+NRVG++F+DYLRNG GATT  A+S R+R
Sbjct: 714 AGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRAR 773

Query: 785 PGLGVSVPLAWEELPVVTAADQWNVGNAAERFAIGNKPWAAMERSRKGLAAAMK 838
            GL VSVP+  EEL  + AA+QWN+ N  E  A  + PWA M + R+ + A M+
Sbjct: 774 DGLPVSVPIWREELAQIKAANQWNITNLHEHLAEVDDPWADMGKVRQSITARMR 827