Pairwise Alignments

Query, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

Subject, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 57/190 (30%), Positives = 79/190 (41%), Gaps = 21/190 (11%)

Query: 239 PGDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEIT 298
           P DW  E K+DG R       G++  ++R     T + P L   LA+       LDGEI 
Sbjct: 232 PSDWQIEWKWDGIRAQVVKRDGQLWVWSRGEELVTERFPEL-HGLAQTLPDGVVLDGEIL 290

Query: 299 V------EGENGAPDFQALQNAFDRGAT-------SAIVYWLFDAPFLDGEDLRELPVEE 345
           V      E E     F  LQ    R          + +V   +D     GED R  P  E
Sbjct: 291 VWKPGETETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHE 350

Query: 346 RRARLAKLLGKKPPAPLRLSEAFDAAPRDLLA----SSARIGFEGIVCKRKGSPYVPRRS 401
           RR++L  L+ + P AP+ LS          LA     S  +G EG++ K++ + Y   R+
Sbjct: 351 RRSQLEHLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRT 410

Query: 402 PD---WIKLK 408
            D   W K K
Sbjct: 411 KDMGIWWKWK 420