Pairwise Alignments

Query, 325 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Variovorax sp. SCN45

Subject, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  156 bits (394), Expect = 7e-43
 Identities = 99/310 (31%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 8   TIAVVAFDGISPFHLSVPCMVFGEDRTETGAPRFRLRVCAPEPGALRTNAGFTLGVEHGL 67
           ++A++ +       LS+   VF       G P +   + +   GA+ T+ GF++      
Sbjct: 3   SVALMVYPNFQSLSLSLGS-VFECANLLRGEPAYEFHLVSESGGAVMTSQGFSVNTT--- 58

Query: 68  EAIR-HARIVVVPSWRDDCAAAPPALIRALQAAHRRGATVVGLCLGAFVLAEAGLLDGRP 126
             IR      ++ S   +       L+  ++AA  +   V  LC+G FVLAEAGLL+G+ 
Sbjct: 59  -PIRPEGYDTLIVSGYLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGLLEGKR 117

Query: 127 ATTHWKLAPAFARQYPKVRLQPEVLYVDDGSVLTSAGTAAGIDCCLHLLRVRHGAETANR 186
            TTHW  APAF ++YP +RL+ + L++ DG V T AG +AG+D  L ++    G++ A R
Sbjct: 118 TTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVENDLGSDLARR 177

Query: 187 AARRMVVAPHRQGGQAQYIEQPVPATGERDRLAPLLEWLGKHLDKPHELDDLARRALMSR 246
            AR++V+A  R+G +   +   +    + DR+   L +  ++L     ++ LA  A +S 
Sbjct: 178 IARKLVIA-QRRGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEALADVARLSP 236

Query: 247 RNFTRRFRESTGTTVGQWVQNQRLALAQRLLETTDEPVERVATGAGFGSAVSLRKHFLSA 306
           R F+R FRE TG T  + +++ R+  A+ ++ET+  PVE VA   GFG    +R+ FL A
Sbjct: 237 RQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRERMRQAFLRA 296

Query: 307 FKVSPMAYRR 316
           F   P   ++
Sbjct: 297 FGQPPQVMQQ 306