Pairwise Alignments

Query, 1200 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1208 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  315 bits (806), Expect = 2e-89
 Identities = 323/1252 (25%), Positives = 523/1252 (41%), Gaps = 142/1252 (11%)

Query: 9    LFSPLLLTLLALIVVALLVWWIGPLVKIGALAPLESELTRAIVIGVIVLA------VLLR 62
            L  PLLL L A++++ + +WW+GP        PL S   R++   V VL       V+LR
Sbjct: 21   LAMPLLLGLGAVLML-VAIWWLGPQWTWRDQQPLASVAHRSMASLVFVLVALLSWLVVLR 79

Query: 63   ALYRRWRARRASRHLTDGLMKAPAARADAPVDGEQKILDTRFSEAVATLKQMRLHAAGK- 121
              +RR +A R          +A AA  D                      Q  +HA  K 
Sbjct: 80   TRFRRLQAER---------QQAMAAEVDPT--------------------QPFVHAQEKA 110

Query: 122  -KPGWRDWLSISGGSY-LYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVG 179
               G   +L  +GG   LY LPWY+ +GA  AGK++ +  +  SF L  +      RG  
Sbjct: 111  LSQGLARYLDNAGGRRALYRLPWYLVLGARQAGKSSFIDCTDQSFSLT-RIDKAQARGRP 169

Query: 180  GTRNC---DWWFTDEAVLIDTAGRYTTQD-------SHQSEDKSA---------WEGFLG 220
                     WW +++AV+ID  G + +Q+       S  ++ +S+         W+  L 
Sbjct: 170  AQALAYPVGWWISNDAVIIDPPGAFISQNGPADSLGSDSTDVESSVPSGTQAKLWQHLLD 229

Query: 221  LLKKARPRRPLNGVFLTVSVADLLSQGPEARSQLAASIRARLLELDSKLTTRLPVYVLVT 280
             L++ R +R LNG+ L V +  LL    E R+ LA  +R RL E+ S+L +RLP+YV+++
Sbjct: 230  WLQRNRSQRALNGLVLVVDLPALLHGTVEQRTALAHLLRTRLYEVSSQLGSRLPLYVVLS 289

Query: 281  KSDLLYGFTDYFDDLGKEQRAQVFGFTLPAEENLQVEEKGLSTAFNREFALLHNRVNDGL 340
            K DLL GF  ++  L   +R  +FGFT   +  +   +  L   +   +  L  ++ + +
Sbjct: 290  KFDLLDGFDQFYSKLSAAKRNSLFGFTFKLDA-VDTFDAWLG-EYGEHYDRLLEQLFEQV 347

Query: 341  IARMQRETDGTRRAAIFGFPAQFGSIGSLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQE 400
            I R+  +     R+ ++    Q   +  +L   L +     RF  P  VRGVY++S  Q 
Sbjct: 348  IDRLDVQGSPALRSRLYSLHRQLLGLRPMLLSFLRETLASDRFTTPALVRGVYWSSVVQH 407

Query: 401  GSPIDRVMGSLARSFGIERAML-APQKSSGRSYFLTSLLREVVFPEQRLAGADVKLERRR 459
            G   +  +   A+ +     +L    ++   +YF+      V++ E  LAG +V++ RR+
Sbjct: 408  GDVRNAFVREAAQPYKTSLPLLEGKPQAKALAYFIQQAFGRVIYKEAGLAGDNVRVARRK 467

Query: 460  HTLRVIGVTAMTLVTVGLLAAW-GYSTLQNMNYLK-----------SVEARVEPARQNLA 507
              L  +G +   L     +A+W  Y  +  +                V+ R++P  +NL 
Sbjct: 468  RQLLWVGSSVGVLAFCVAIASWHRYFDINGVKAASVLAKSREYSHHEVDQRLDPTGRNLL 527

Query: 508  ALPARVQNLVEVAPVLQGLRDIWKTPENRAGDEPLSMTLGLYQGDKLDAAAMLTHQRALN 567
                ++++ V    V    R  W          P    LGLYQG  +       +   L+
Sbjct: 528  EPLDQIRDAV---AVFGDYRAAW----------PGVADLGLYQGRTIGPTVDEAYLSLLS 574

Query: 568  DAFLPQIAKRIEDQLRTAQKDNLEYTYEALKSYLMLYQPEHFDAEALKAWITLDWSRNLD 627
              FLP +A  + + +  A   + E    AL+ Y ML    +  AE ++ W+   W     
Sbjct: 575  RRFLPALASGVIEAMDAAPPGS-EQQMAALRVYRMLEDRRNRRAEWVEDWMARQW----Q 629

Query: 628  RGIPEDQRKQLEDQLDVLIAQGPPRSPLKMDENLVRSVRAVLASYPLEQRVFSRLKRQRA 687
            +  P   + Q +    +  A     + L      V  V+  L   PL QRV++ LK+Q  
Sbjct: 630  QAFPGQGQLQRDLMRHLKYALTYADTDLPQYRQRVSHVQQTLRKVPLPQRVYAGLKQQAQ 689

Query: 688  TKDIPAFSVAAATGPSGPLVFERISGKPLTEG---VPGMFTYDGYHKRFQNEVTVLTGLL 744
             +      +    GP+  +V++  SG    +    +  M T  G+ + F+      T  +
Sbjct: 690  EQLHTGLDLRHQVGPAFDVVYQLSSGSSQGDNGVLLAPMLTAKGFKEYFEPRSQRFTE-M 748

Query: 745  ANEDPWVLGQ----DRNTADRLRDVAALGALTDRVRRLYLEEYVKQWEALLSDVRLIRAN 800
            A  D W LG+    D + AD+        AL +R+R LY  +Y+  W   L+   +    
Sbjct: 749  AMIDQWALGERAQLDYSDADQ-------AALNERLRNLYSADYIDSWRRALNAFSVADFR 801

Query: 801  GLDKNIETARILSGVGSPLSNFLRAVVKETTLIPQGDAGKDVVSKATETVRNTRKGLEDL 860
             LD  +     L+G  +PL   L  V   ++L+   + G  V  +A   V    K     
Sbjct: 802  DLDHGVTILEQLAGPAAPLHRLLETVRDNSSLLSPVNVG--VADEAPSPVSINSK----- 854

Query: 861  FGGDPGRQVPAGKRIESIVDDRFEPLRRLVTAGGPNQPAPIDDALKLFNEVYVYLTAVD- 919
                P +Q         ++   F  L  ++ A G  +P+  D+       V+ Y  AV  
Sbjct: 855  ----PEQQQAL------VIQRAFAGLSAMLHAAG-EKPSYYDETHAAIVAVHDYAKAVQG 903

Query: 920  ---------TAVKGRTSPPPGDVAGKLKSDAGRLPEPVRSMVENLSQSGAAQAQTAERGN 970
                      AV  R S    D  G L+  A  LPEP+   V  ++   A          
Sbjct: 904  SPDRGKAALHAVHQRFSMTGHDPIGTLQRVATGLPEPINHHVRKVAHQTAQVLNVEALRE 963

Query: 971  LSQDL-RPVAEFCARAIAGRYPFVGNSKRDVLPEDFGQMFGPGGLMDDFFQKRLAALVDT 1029
            L +     V  F  + +A RYPFV  +  D   EDF   FGP G +  F  + L   +  
Sbjct: 964  LERRWDAEVYSFFQQRLAERYPFVVRAP-DASLEDFEAFFGPNGRLQQFQDQYLKLFLKD 1022

Query: 1030 STRPWRYKPVAERGAITTQALAQFERAARIKDIFFRGGGRGPSMRLDFKPVEMDAGITQF 1089
            +    +   +  R  I T  + Q ERA RI++ FF   G   S++   +P+ + A     
Sbjct: 1023 NLEALQ-NGLQGRSLIRTDVIEQLERADRIRETFFDQRG-NLSVQFSIEPLGLSANQRTS 1080

Query: 1090 ILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRIQVSPPSTTG-SSGEAVDGPWALFRAL 1148
            +LD+DGQL+ Y HGP     + WP   G + VR  ++     G SS     GPW++FR L
Sbjct: 1081 LLDLDGQLISYTHGPSQITGIVWPNTLGQH-VRSNLTLLRQNGNSSSLEYRGPWSMFRLL 1139

Query: 1149 DDGQLEAGDAPEKFFITFQIGARKTRFEVTTNSVQHPIRLRELREFSCPEGL 1200
              G L  G       ++F+ G    R+ +      +PI  +  + F  P GL
Sbjct: 1140 SRGALN-GRTATSVDLSFKTGDGVMRYRLNAEKAFNPITQQPFKGFRLPRGL 1190