Pairwise Alignments

Query, 1200 a.a., T6SS component TssM (IcmF/VasK) from Variovorax sp. SCN45

Subject, 1267 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  203 bits (517), Expect = 6e-56
 Identities = 172/585 (29%), Positives = 270/585 (46%), Gaps = 51/585 (8%)

Query: 14  LLTLLALIVVALLVWWIGPLVKIGALAPLESELTRAI--VIGVIVLAVLLRALYRRWRAR 71
           LL LL    + L + W+  L+     APL   L   +   + +I    LL  + R+++  
Sbjct: 4   LLRLLKSFWLLLPLLWLASLLICWLAAPLVPWLRHHVPEALAIISACFLLVIVLRQYQRI 63

Query: 72  RASRHLTDGLMKAPAARADAPVD-GEQKILDTRFSEAVATLKQMRLHAAGKKPGWRDWLS 130
           RA  +L + L        +A  +  +Q++L  R   A+  L+  R    G          
Sbjct: 64  RAEHNLENLLQIEVDRSWNATGEFRDQQVLRERLKHAITMLRTDRSAGGG---------- 113

Query: 131 ISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGGTRNCDWWFTD 190
             G + L DLPWY+ +G   AGKT+ L +SGLS  +A      A     GT++CDW+F+ 
Sbjct: 114 --GKAALSDLPWYLVVGMSAAGKTSLLTHSGLSASIAT-----ANDSESGTQHCDWYFSP 166

Query: 191 EAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVSVADLLSQGPEA 250
           +AV+IDTAGRY   D   SE    +  FL +L+K R +  +NG+ L VS+ +LL+   + 
Sbjct: 167 DAVMIDTAGRYLRDDQSASE----FSAFLRMLRKQRGKAAINGLVLVVSLPELLAANSDE 222

Query: 251 RSQLAASIRARLLELDSKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQRAQVFGFTLPA 310
           R+ LAA + AR+ E    L    PVY++++K+D L GF+  FD L   +R Q  G T   
Sbjct: 223 RNALAAQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTFGL 282

Query: 311 EENLQVEEKGLSTAFNREFALLHNRVNDGLIARM---QRETDGTRRAAIFGFPAQFGSIG 367
            E   +   GL          L   +   + A+M     E D T    +  FP  F ++ 
Sbjct: 283 SE---IRTNGLHAVLQTRLKKLQAHIRQHVDAQMIALGAEADST----LLNFPQYFAALS 335

Query: 368 SLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGS-LARSFGI-----ERAM 421
            +L   LE    G R   P  +RG+YFTS  Q G  + +V    +A  F +     E+A 
Sbjct: 336 GVLEQFLEHFTRGHRGGAPLLLRGLYFTSALQNGQQLGQVYEDVIADEFALQAAYDEQAG 395

Query: 422 LAPQKSSGRSYFLTSLLREVVFPEQRLAGADVKLERR-RHTLRVIGVTAMT-LVTVGLLA 479
              +    RSYF+T   R+V+FP++ L     +L R+   +  ++G+ A T L+ +G  A
Sbjct: 396 HVGKALGNRSYFITDTFRQVIFPDRDLILYQSRLGRQAAFSPLLLGLAAATGLLFIGWQA 455

Query: 480 AWGYSTLQNMNYLKSVEARVEPARQNLAALPARVQNLVEVAPVLQGLRD-IWKTPENRAG 538
               +  Q ++ L+   A +E A      L A           L+ LR+ +     +R  
Sbjct: 456 LSFANNRQWLDSLRGQLAHIEQAADREQQLAA--------GKGLEVLREQMANVKAHRLQ 507

Query: 539 DEPLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLR 583
             PL +  GLYQG+ +       +   L    L  IA+ ++ Q+R
Sbjct: 508 GVPLQLGGGLYQGEAIHQVTRSAYLAQLRSQALEPIARSLQVQMR 552



 Score = 73.9 bits (180), Expect = 8e-17
 Identities = 141/642 (21%), Positives = 241/642 (37%), Gaps = 90/642 (14%)

Query: 574  IAKRIEDQLRTAQKDNLEYTYEALKSYLMLYQPE-HFDAEALKAWITLDWSRNLDRGIPE 632
            +++ +  +L   Q  ++   Y  LK YL+L +P+ H D   + A +   W+     G P 
Sbjct: 625  LSEEMLGRLDEQQVASIIEAYNTLKLYLLLTEPQAHPDPAFVAASLPQAWASAAGEGTPA 684

Query: 633  DQRKQLED-QLDVLIAQGPPRSPLKMDENLVRSVRAVLASYPLEQRVFSR--LKRQ-RAT 688
            D     E+  L V + +      L  +E L+   R  L S+ +   +  R  L+ Q  ++
Sbjct: 685  DAGVIAENAPLYVQLLEQGQAPSLPRNEQLINETRQNLKSFMISSSLVDREYLRLQLESS 744

Query: 689  KDIPAFSV-AAATGPSGPLVFERISGKPLTEGVPGMFTYDGYHKRFQNE-VTVLTGLLAN 746
            +  PA S+      P   L++        T GVP ++T  G+    + E + +++G L N
Sbjct: 745  RQFPALSLNDLVPQPGRALLYG-------TAGVPAIYTRQGWDTFVKPELIKLVSGNLRN 797

Query: 747  EDPWVLGQDRNTADRLRDVAALGALTDRVRRLYLEEYVKQWEALLSDVRLIRANGLDKNI 806
            E  WVL  D    D L  V     + + + R Y  +Y + W  ++S V +     L    
Sbjct: 798  ESDWVL--DGEGGDAL--VQKANFVREFMTR-YKRDYTQAWYKMVSSVGVRHFADLASAT 852

Query: 807  ETARILSGV-GSPLSNFLRAV---------VKETTLIPQGDAGKDVVSKATETVRNTRKG 856
                +LS V  SP+ N L+AV         VK+    P         SK T        G
Sbjct: 853  RELGLLSDVQNSPVKNLLQAVNDNTQWDLPVKQAIPAPGTSRDDGFWSKVT--------G 904

Query: 857  LEDLFGGDPGRQVPAGKRI-ESIVDDRFEPLRRLVTAGGPN--QPAPIDDALKLFNEVYV 913
            L D     P    PA   + +  +  RFEP+ R+             +D  L    ++ V
Sbjct: 905  LFDANDTLPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALRKLKV 964

Query: 914  YLTAVDTAVKGRTSPPPGDVAGKLKSDA--GRLPE--PVRSMVENLSQSGAAQAQTAERG 969
             +  +      + S   G  + +L S+   G+  E   VR+ VE+   +       + +G
Sbjct: 965  RMNNI------QRSQDVGKSSKQLISETLEGQPSEITTVRNYVESSVDTSQDGLSRSLQG 1018

Query: 970  NLSQDLR--------PVAEFCARA------------IAGRYPFVGNSKRDVLPEDFGQMF 1009
              S  ++        P  E  A+A            +A RYP  G+S+ +   +D  +  
Sbjct: 1019 LFSLPIQYAWATLRDPAGEQIAKAWAQQIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFV 1078

Query: 1010 GP-GGLMDDFFQKRLAAL-------VDTSTRPWRYKPVAERGAITTQALAQFERAARIKD 1061
             P  GL+  F +  +  L       V     P           +    L   ++A+ +  
Sbjct: 1079 DPDSGLLPAFKRNEIGNLAGGEGLGVGDGKGP---------ALVNPGMLNSIDKASSVGQ 1129

Query: 1062 IFFRGGGRGPSMRLDFKPVEMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQV 1121
            +      R     +  +P    A  T  +  +DGQ   Y +G        WPG   +   
Sbjct: 1130 VIASLSDRDNGFEIMLEP---SANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSTAPGA 1186

Query: 1122 RIQVSPPSTTGSSGEAVDGPWALFRALDDGQLEAGDAPEKFF 1163
            R+ V   S T  +     G W L R  +  +++  D  ++ F
Sbjct: 1187 RLDVVTLSGTRVTVFDFPGRWGLLRMNESARVDDLDGIQQRF 1228