Pairwise Alignments

Query, 497 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  126 bits (317), Expect = 2e-33
 Identities = 112/400 (28%), Positives = 176/400 (44%), Gaps = 51/400 (12%)

Query: 41  PPGLDPTTGAASAIAEITQYNIFETLTKVNADGS-VTPMLAESWSSSPDMKTFVFKLRKG 99
           P G DP         + +   +F  LT+    G+ V P LA  W  S D KT+ F LR+G
Sbjct: 36  PAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREG 95

Query: 100 VRFEN------DQPFNAHTVKFSFDRA-----GGAKSTNKDKRFFSEIG-------TVVL 141
           V+F         +PFNA  V F+F+R         K+   +  +F+++G          L
Sbjct: 96  VKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKL 155

Query: 142 DEYTVGVNSTLPNPDLPFM--LGQSTACIVEP----------KSADTNATAPVGTGPYKL 189
           DE+T  V  TL   D  F+  L  S A I             K+AD N   P+GTGP+  
Sbjct: 156 DEHT--VKFTLNEVDAAFIQNLAMSFASIQSAEYADQLLKNGKAADIN-QKPIGTGPFVF 212

Query: 190 SAWQRGASCTLVKSPSYRDQNLAKVPKFVFRFMSDTAAQTAALMAND--IDIFPRAGTRS 247
           S +Q+ A      +  Y      K+   +F   +D + +   L  N+  + +FPR     
Sbjct: 213 SKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRMQKLKKNECQVTLFPRPA--D 270

Query: 248 VAQFKGNPRFQVIEVG--TRGKVILTI------NNRKKPLDDVRVRRAILAAIDRNAIIQ 299
           +   K +   Q+ +      G +   +      +N   P+  ++VR+A+  A+D+  II+
Sbjct: 271 IEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIE 330

Query: 300 GAADGFGKPIGSHYAMGAPGFVDTTAMNPFDIEKAKKLLAEAGVKTPLELRL-----QLP 354
               G G+   +        + D+     FD EKAK+LL EAG+K   E+ L     Q P
Sbjct: 331 SVYQGAGQLAVNAMPPTQWSYDDSIKDAAFDPEKAKQLLKEAGIKEGTEITLWAMPVQRP 390

Query: 355 PPSYARQGGEMIAAQLAQIGINVKIQNVEWAQWLSGTFGG 394
               A+   EM+ +  A+IGI  KI + EW +++  + GG
Sbjct: 391 YNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGG 430