Pairwise Alignments

Query, 334 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 320 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 21/287 (7%)

Query: 1   MKKLLSAAGATALLMASATGVSTAFAADAMSLMLNWTPTADHAPLYYAKAKGW----YSE 56
           M K   A  ATAL+ A+   +  A +A A ++ + + P   ++ +  AK KGW    +++
Sbjct: 1   MLKKNIAKTATALVAAA---LLWAGSAAAETVNIGFMPFVPYSAILLAKQKGWVDEEFTK 57

Query: 57  AGI-DLSIE----AGKGSAVSAQRVGTGGSTLGISDLPTTIQAKGKGADVKAV-MVIYAN 110
           AG+ D+ I+    AG G  V+            + D P+ I A   G D + V +     
Sbjct: 58  AGLKDVEIKWHQFAG-GPPVNEAFASGALDIAALGDTPSLI-AFANGIDTRFVGLACKGA 115

Query: 111 SPQGFYWLKSSGINGPKDFAGRKIGNPPGDAARLMWPAFAKKAGLDPASVTFVNVSPQAK 170
             +    LK S +   KD  G+K+    G     +      +AGL  + V F+N+  Q  
Sbjct: 116 KAEALIVLKDSSVKTVKDLKGKKVATLRGGNVHELLVLVLAEAGLKISDVEFLNLGLQDM 175

Query: 171 VAALKSKSVDIISDFYNEHDLKAREFGADLGFQAWRD-AGVNVYGNSLIVNGPYLAKNPA 229
             AL    VD +  +    +    +  ++   +  RD AG+    N ++  G + AK+P 
Sbjct: 176 GIALTKGDVDAVLVW----EPLLTKLDSEGVSRTLRDGAGLKSNLNPIVALGSFAAKHPD 231

Query: 230 QVKKFVAVTQRAYEACVKDFEPCLQALTASVSGLSPDNQRDQWNRIK 276
            +K ++   +R  EA   D     Q L A V GL+P      ++R +
Sbjct: 232 VLKAYLQAVKRGAEALRSDPAGSAQVL-APVVGLTPKQTELAFSRFE 277