Pairwise Alignments

Query, 612 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Variovorax sp. SCN45

Subject, 426 a.a., C4-dicarboxylate ABC transporter permease from Pseudomonas simiae WCS417

 Score =  120 bits (302), Expect = 9e-32
 Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 12/214 (5%)

Query: 12  MFAGLICFLLLGYPVAFSLGACGLFFGLVGIELGVFQSSVMAWLPQRLIGIMANDTLLAV 71
           +F  L  F+ LG P+A SLG  G       + + +F    ++ L  +L       T LA+
Sbjct: 6   LFLLLFVFMFLGVPIAISLGLSG------AVSILMFSQDSVSSLAIKLFETSDAYTFLAI 59

Query: 72  PFFTLMGLILERSGMAEDLLDTVGQVFGPMRGGLALAVIFVGALLAATTGVVAASVISMG 131
           PFF L G  +   G+A+ L+D      G +RGGLA+A +    L AA +G   A+V ++G
Sbjct: 60  PFFLLSGAFMTTGGVAQRLIDFANACVGHIRGGLAIAAVLACMLFAALSGSSPATVAAVG 119

Query: 132 LISLPIMLRYGYDRRLSSGVIAASGTLAQIIPPSLVLIIMADQLGKSVGDMYKGAFLPGF 191
            I++  M+R GY +   +G+I  +GTL  +IPPS+V+++ +     SVG ++    +PG 
Sbjct: 120 SIAVAGMVRSGYPKAFGAGIICNAGTLGILIPPSIVMVVYSAATETSVGKLFMAGVIPG- 178

Query: 192 MLMGLYVVYVVFLAIFRPAQVPALPPEAR-TFRE 224
           +L+GL    ++ +AI+  A++  LP + R TFRE
Sbjct: 179 LLLGL----MLMIAIYIVARIKKLPAQPRATFRE 208



 Score =  104 bits (259), Expect = 9e-27
 Identities = 80/279 (28%), Positives = 132/279 (47%), Gaps = 38/279 (13%)

Query: 264 VTSVATDEKVVVAMCGGVFVALVIALINKGLKLNLLSRLAERVTFVLIPP---------- 313
           V S AT+  V     G +F+A VI  +  GL L +   +  R+  +   P          
Sbjct: 158 VYSAATETSV-----GKLFMAGVIPGLLLGLMLMIAIYIVARIKKLPAQPRATFREWLTS 212

Query: 314 -------LLLIFLVLGTIFLGVATPTEGGAMGAL-GALIMAWVRRRMSLALLKQALASTT 365
                  LLL+ ++LG I+ G+ TPTE  A+ A+  A +  ++ + M L    + L  + 
Sbjct: 213 ARRAFWGLLLLVIILGGIYSGMFTPTEAAAVAAVYSAFVALFIYKDMQLRDCPKVLLESG 272

Query: 366 KLSSFVMFILIGATVFSLVFQAADGPIWVEHLLSSLPGGPVGFLIAVNVLVFFLAFFLDY 425
           +L+  +MFI+  A +F+ V      P  +   + S    P+GFLI VNV++     F++ 
Sbjct: 273 RLAIMLMFIIANAMLFAHVLTTEQIPQEITAWVLSEGLTPIGFLIMVNVVLLIAGSFMEP 332

Query: 426 FELSFIVVPLLAPVAHKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFFLRSVAPDKQYVD 485
             +  I+ P+  P+A KLGID I  G+++ VNM+   +HPP G  LF   +V        
Sbjct: 333 SAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVGLNLFVTSAVT------- 385

Query: 486 RVTQKVMEPVTTMQIYRGAVPFVLIQLTMVGVLIAFPQI 524
                    +T  Q  R A+P+++I L  + ++   P I
Sbjct: 386 --------GLTLGQTIRAALPWLMILLVFLIMVTYLPFI 416



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 107 LAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDRRLSSGVIAASGTLAQIIPP-S 165
           L ++ V  L+A +    +A V+ +  I  PI ++ G D      V+  +  +  + PP  
Sbjct: 316 LIMVNVVLLIAGSFMEPSAIVLILAPIFFPIAMKLGIDPIHLGIVMVVNMEIGLVHPPVG 375

Query: 166 LVLIIMADQLGKSVGDMYKGAFLPGFMLMGLYVVYVVFL 204
           L L + +   G ++G   + A LP  M++ ++++ V +L
Sbjct: 376 LNLFVTSAVTGLTLGQTIRAA-LPWLMILLVFLIMVTYL 413