Pairwise Alignments

Query, 384 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  137 bits (346), Expect = 4e-37
 Identities = 103/330 (31%), Positives = 159/330 (48%), Gaps = 26/330 (7%)

Query: 7   FKPALLAFAAATAFGAQA---ADIKIGVAAALSGGAAQYGSAIRNGFQLAADEINAAGGI 63
           +K   LA A ATA G  +   AD+KIGVA  ++G  A +G     G Q AAD+INAAGG+
Sbjct: 6   YKKGFLALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGV 65

Query: 64  NGDKIVLAVEDEQGKKEDAINVFKKLIFQDKVLMTFGPTLSNSAQAADPIAQAAKTVAFG 123
           NG+KIVL   D+  + + A+ V  +L+ QDKV+   G   S++   A  +   A  +A  
Sbjct: 66  NGEKIVLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAIT 125

Query: 124 TSNTADGITSIG-DYVFR-------NSVTEADVLPETLRVAIKHANVKKVAVLYGNDDVF 175
             +T   +T  G   +FR         +   D + + L+        KKVAVL+ + D +
Sbjct: 126 PGSTNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLK-------GKKVAVLH-DKDTY 177

Query: 176 TKSGYDNFKKALEDLKLPVTTTETFAKGDVDFKAQLTKIKATNPDAIVLSALLAEGAPIM 235
            +   D  K  LE   +     E   +G+ DF A +TKI++T  D +    L  E  P++
Sbjct: 178 GQGLADATKAQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLV 237

Query: 236 VQARQLGL-NVPVIGGNGMNSTKIFDLAKGSSDNLYVGSPWSASNATPENTKFQKAYNDK 294
            Q R+ GL +V  +  +G+ + ++   A G+    YV   +    A P      KA  ++
Sbjct: 238 RQLREQGLKDVKFMSDDGIVTDELVSTAGGAQ---YVDGVYMTFGADPRLLPDSKAVVEE 294

Query: 295 FKMA---PDQFAAQAYDGLYVVAQALKGVK 321
           F+ A   P+ +   AY  L  +A A  G K
Sbjct: 295 FRKAGTEPEGYTLYAYASLQALAAAFNGAK 324