Pairwise Alignments

Query, 384 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 7e-28
 Identities = 96/352 (27%), Positives = 154/352 (43%), Gaps = 11/352 (3%)

Query: 1   MRLPNSFKPALLAFAAATAFGAQAADIKIGVAAALSGGAAQYGSAIRNGFQLAADEINAA 60
           +++   F   +LA  A+ +F A    IKIG+A   +G   QYG     G + A  +INAA
Sbjct: 2   IKISKLFAAMVLAGVASHSFAADT--IKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAA 59

Query: 61  GGINGDKIVLAVEDEQGKKEDAINVFKKLIFQDKVLMTFGPTLSNSAQAADPIAQAAKTV 120
           GG++G  +     D+    + A+ V  K++  D V    G   S+S Q A  I +    +
Sbjct: 60  GGVDGKMLEAKEYDDACDPKQAVAVANKVV-NDGVKFVVGHLCSSSTQPASDIYEDEGVI 118

Query: 121 AFGTSNTADGITSIG-DYVFRNSVTEADVLPETLRVAIKHANVKKVAVLYGNDDVFTKSG 179
               + T+  IT+ G   +FR    ++   P        H   K VAVL+     + +  
Sbjct: 119 MITPAATSPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQ-YGEGI 177

Query: 180 YDNFKKALEDLKLPVTTTETFAKGDVDFKAQLTKIKATNPDAIVLSALLAEGAPIMVQAR 239
               K+ LE     V   E    GD DF + + K+K  N D +       E   I+ QA+
Sbjct: 178 ATAVKQTLESKGTKVAVFEGLNAGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQ 237

Query: 240 QLGLNVPVIGGNGMNSTKIFDLAKGSSDNLYVGSPWSASNATPENTKFQKAYNDKFKMAP 299
           + GL    +G  G+ +  I  +A+ +S+ L V  P  + +A P N K   A     K   
Sbjct: 238 EKGLKAKFMGPEGVGNDSISQIAQNASEGLLVTLP-KSFDADPANKKIVDAIKADGKDPS 296

Query: 300 DQFAAQAYDGLYVVAQALKGVKLSGNLAADRTALRDALPNVKWTGATGAFAF 351
             F   AY  + ++AQ   G+K +G+   D+ A  +A+    +   TG  +F
Sbjct: 297 GPFVFPAYSAVELIAQ---GIKKAGSDDTDKVA--EAIHKGTFKTPTGDLSF 343