Pairwise Alignments

Query, 300 a.a., Dipeptide ABC transporter, permease protein DppC (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  214 bits (544), Expect = 3e-60
 Identities = 113/301 (37%), Positives = 182/301 (60%), Gaps = 10/301 (3%)

Query: 6   PLNTAQAPAAPADDEAPFVPPR---FRWVRKHPTLIIGALLLIAIAALSIAAPWIATHDP 62
           P+  + +PA+P D    +  P    ++   ++   ++G   +  +   ++ APW+A HDP
Sbjct: 4   PIPKSVSPASPVDQSLLYPSPYKEFWQAFARNKGAVMGLAFMCLVVFCALFAPWVAPHDP 63

Query: 63  QD------IDPLARMQPPSAEHWFGTDALGRDVFSRAVWGGQVSMIVGATVAVLATFFGI 116
            +      + P   ++  + +   GTD LGRD+ SR + G ++S+++G +  V++   GI
Sbjct: 64  SEQYRDFLLTPPVWLEGGTWQFILGTDELGRDLLSRLIQGARLSLLIGLSSVVMSLIPGI 123

Query: 117 ALGLVAGFVRWADGP-VMRVMDGLMAIPGILLAIALMAVTRASLTTVIIAITVPEIPRVV 175
            LGL+AGF     GP +MR+MD ++A+P +LLA+A++A+    L   +IAI +  +P  V
Sbjct: 124 LLGLLAGFFPQLLGPSIMRLMDVMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYV 183

Query: 176 RLVRSLALTLREQLFVEAAHAVGTRLPTILVRHVLPNIVAPLVVQATFVAAAAVLTEAAL 235
           RL R+  +    + +V AA   G  LP ++   VLPN +APL+VQAT   ++A+L  AAL
Sbjct: 184 RLTRAAVMGELNRDYVTAARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAAL 243

Query: 236 SFLGVGVPSQTPSWGNMMAEGRNFVTVAFHIILYPGLLLAATVLAINLLGDGLRDALDPR 295
            FLG+GV   TP WG M+A  R+++  A+ ++  PGL +  +VLAINL+GDGLRDALDP+
Sbjct: 244 GFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 303

Query: 296 L 296
           L
Sbjct: 304 L 304