Pairwise Alignments

Query, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Xanthobacter sp. DMC5

 Score =  145 bits (366), Expect = 1e-39
 Identities = 92/303 (30%), Positives = 162/303 (53%), Gaps = 20/303 (6%)

Query: 1   MDILLQQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGALTSWTIIGLMKDG 60
           M++L+Q ++NG++LGSMYA+I++G T+++GI+ ++NFAHGE LMVG   ++ +    K G
Sbjct: 1   MEVLIQLVLNGILLGSMYAIISVGLTLIFGIVRVVNFAHGEFLMVGMYAAYLLAA--KFG 58

Query: 61  MPNTPGWLILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLAM 120
           +   P    + I +++  I AA   F+I+     PL  + +   +   +G+S  L  LA+
Sbjct: 59  L--HPYAAAVPIVILLFAIGAAVQRFLIQ-----PLLGAEEHIQIFATVGLSTALVNLAL 111

Query: 121 IIWKPTNKAYPNLLPTDPIHVAGAVISPTQVMILSVTAFSLVV-LMWLVNYTKLGRAMRA 179
           +++     + P       + V G  +   Q +++ V A +LV  L   +  T LGRA+RA
Sbjct: 112 LVFGADLYSIPPSAAQGTVMVGGFSLVKGQ-LVMFVCALALVAGLHLFMQSTALGRAIRA 170

Query: 180 TAENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHAMGFLPGLKAFTAA 239
           TA+N   A LMG++ D +    F IGA    +A  +    Y +    +G    L AF   
Sbjct: 171 TAQNRTAALLMGVKVDQIYVIAFGIGAACVGLASALVMPLYPVTP-TIGTYFVLTAFVVV 229

Query: 240 VFGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVLIVMLTLRPSG 299
           V GG+ ++ GA  G +++GL++++   YI          +  ++  F + + +L  +P+G
Sbjct: 230 VLGGMRSMYGAFFGAMIIGLVDSLSGYYI--------APDLKEVVYFAIFLAILIFKPTG 281

Query: 300 LLG 302
           L G
Sbjct: 282 LFG 284