Pairwise Alignments

Query, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  254 bits (650), Expect = 1e-72
 Identities = 141/304 (46%), Positives = 201/304 (66%), Gaps = 14/304 (4%)

Query: 3   ILLQQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGA-LTSWTIIGLMKDGM 61
           I LQQ++NGL LGS+Y LIA+GYTMVYGII +INFAHGEV M+ A L + ++  L   G+
Sbjct: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGI 63

Query: 62  PNTPGWLILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLAMI 121
            + P  L++L  L+   +V     +VIE+VAY+PLRNS +LAPLI+AIG+S++LQ  A I
Sbjct: 64  ESFP--LLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQI 121

Query: 122 IWKPTNKAYPNLLPTD---PIHVAGAVISPTQVMILSVTAFSLVVLMWLVNYTKLGRAMR 178
                 +  P LL       I      ++ T+V IL      + +L +++ YTKLGR  R
Sbjct: 122 AQGAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMCR 181

Query: 179 ATAENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHAMGFLPGLKAFTA 238
           AT ++ ++A+++GI  D VIS  F+IGA +AA+AGV+   NYG      GF+ G+KAFTA
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFTA 241

Query: 239 AVFGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVLIVMLTLRPS 298
           AV GGIG+L GA++GGI+LG+ E++ S        G++ S+Y D+F+F +L+V+L  RP 
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFS--------GLINSDYKDVFSFSLLVVILIFRPQ 293

Query: 299 GLLG 302
           GLLG
Sbjct: 294 GLLG 297