Pairwise Alignments

Query, 402 a.a., Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

 Score =  242 bits (618), Expect = 1e-68
 Identities = 159/371 (42%), Positives = 216/371 (58%), Gaps = 49/371 (13%)

Query: 5   KNLALYIVGAIAVLALPLLLQMQGNAWVRIADIALLYVLLALGLNIVVGYAGLLDLGYVA 64
           K+   YI+ A+ V+A+   +       + +  + L+YVLL LGLNIVVG AGLLDLGYVA
Sbjct: 102 KSRLRYIIPALIVIAIVFPI-FANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVA 160

Query: 65  FFAVGAYLFALMGSSHLTETFPWFAQMFPNGMHTSLLIVIPLALVVAGCLGVLLGAPTLK 124
           F+A+GAY  AL G  +L   F W               V+PLA + A   G +LG P L+
Sbjct: 161 FYAIGAYGLAL-GYQYLGLGF-WS--------------VLPLAAIAAALAGCILGFPVLR 204

Query: 125 LRGDYLAIVTLGFGEIIRVFLNNLDQPVNITNGPKGITAIDSIKFWGLDLGKAWK----- 179
           + GDYLAIVTLGFGEIIR+ LNN    ++ T GP G+ A  S  F+GL+ G+  K     
Sbjct: 205 MHGDYLAIVTLGFGEIIRLVLNNW---LSFTGGPNGMPA-PSPTFFGLEFGRRAKDGGVP 260

Query: 180 ---FDGF----TISSVSLYYYLFLALVVATVIISHRLQTSRIGRAWMAIREDEIAAKAMG 232
              F GF    ++  V +Y  LF+ +V+A + I HRL    +GRAW A+REDEIA ++MG
Sbjct: 261 IHEFFGFEYNASLKFVFIYAVLFM-VVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMG 319

Query: 233 INTRNMKLLAFGMGASFGGVSGAMFAAFQGFVSPESFSLMESVMIVAMVVLGGIGHLPGV 292
           +N   +KL AF +GAS  G++G  FA +QGFV+P SF+  ES +I+A+VVLGG+G   GV
Sbjct: 320 LNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFESALILAIVVLGGMGSTVGV 379

Query: 293 ILGAVLLAALPEVLRYVAGPLQAATDGRLDASILRQLFIALAMIVIMLLRPRGLWPSPEH 352
           ++ A +L   PE+LR                S  R L   + M+++M+ RPRGL      
Sbjct: 380 VIAAFVLTVAPELLR--------------SFSEYRVLLFGVLMVLMMIWRPRGLIRISRT 425

Query: 353 GKTLARKGGVP 363
           G T  RKG  P
Sbjct: 426 GVT-PRKGVAP 435