Pairwise Alignments

Query, 416 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Variovorax sp. SCN45

Subject, 345 a.a., DNA topoisomerase from Pseudomonas simiae WCS417

 Score =  301 bits (771), Expect = 2e-86
 Identities = 162/306 (52%), Positives = 201/306 (65%), Gaps = 18/306 (5%)

Query: 30  LVYVNPDMPGIRRLRHGERFRYRDAKGRWLRDVDEISRIRMLAIPPAYTQVWICPLPNGH 89
           L YV+   PGIRR     RF+Y D +G  + D +EI R+  LA+PPAYT VWIC  P GH
Sbjct: 10  LHYVDDTQPGIRRKTVRGRFQYFDPQGVRITDAEEIKRLNALAVPPAYTDVWICADPRGH 69

Query: 90  LQATGIDARGRKQYRYHADWRVMKDETKFERLEAFALALPRIRARVARDLQPEKGQGNGQ 149
           LQATG DARGRKQYRYH  WR ++D  K+ RL+ F  ALP++R ++   +          
Sbjct: 70  LQATGRDARGRKQYRYHPRWREVRDSDKYSRLQEFGNALPKLRKQLEAKIAE-------- 121

Query: 150 QAPG--RGQVLAALVRLLDTTLLRIGNEEYASSNGSYGLTTLRNRHADVHGAALRLRFKG 207
             PG  R +VLA +V LLD TL+R+GN +YA  N SYGLTTLR RH DV G+ ++ +F+G
Sbjct: 122 --PGFTRKKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRTRHVDVKGSEIQFQFRG 179

Query: 208 KSGVMHEARLDDPRVAKVVRQCQQLPGQALFQYAGEDGELHSVSSTDVNDYLAEAAPGER 267
           KSGV H+  + D R+A VV++C +LPGQ LFQY  EDGE H+VSS DVNDYL  +  G  
Sbjct: 180 KSGVEHQISVKDRRLATVVKRCLELPGQNLFQYLDEDGERHTVSSHDVNDYL-HSLTGAD 238

Query: 268 FTAKDFRTWHGTVQALELTR-LACEPGRTAADGTRYSAKDILAAVAKQLGNTPAVCKKAY 326
           FTAKD+RTW GT  AL + R L  +P   A        KD    VAKQLGNTPAVC+K Y
Sbjct: 239 FTAKDYRTWAGTAMALAVLRELEWQPESDAKRHVVAMVKD----VAKQLGNTPAVCRKCY 294

Query: 327 VHPAVL 332
           +HPAVL
Sbjct: 295 IHPAVL 300