Pairwise Alignments

Query, 416 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Variovorax sp. SCN45

Subject, 340 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  300 bits (768), Expect = 4e-86
 Identities = 168/357 (47%), Positives = 221/357 (61%), Gaps = 33/357 (9%)

Query: 25  PIANGLVYVNPDMPGIRRLRHGERFRYRDAKGRWLRDVDEISRIRMLAIPPAYTQVWICP 84
           P+   L YV+   PG+ R R  +RF Y DA G+ +RD + ++RI  L IPPAYT VWIC 
Sbjct: 5   PLPRTLHYVDDSQPGLTRRRWRDRFIYLDADGQRVRDSETLARIAALVIPPAYTDVWICA 64

Query: 85  LPNGHLQATGIDARGRKQYRYHADWRVMKDETKFERLEAFALALPRIRARVARDLQPEKG 144
            P GHLQATG DARGRKQYRYHA WR ++D+ K+ R+ AFA ALP++R ++   L     
Sbjct: 65  DPQGHLQATGRDARGRKQYRYHAQWRELRDQHKYGRMLAFAQALPKLRTQLEAHL----- 119

Query: 145 QGNGQQAPGRGQVLAALVRLLDTTLLRIGNEEYASSNGSYGLTTLRNRHADVHGAALRLR 204
               +    R +V+A +V LLD TL+RIGN+ Y   N SYGLTTLRNRH  V G+ +R +
Sbjct: 120 ---ARPGLDREKVMALVVSLLDHTLIRIGNQRYLRDNRSYGLTTLRNRHVQVKGSTIRFQ 176

Query: 205 FKGKSGVMHEARLDDPRVAKVVRQCQQLPGQALFQYAGEDGELHSVSSTDVNDYLAEAAP 264
           F+GK GV H   L+D R+A ++++C +LPGQALFQY  EDG+ HSV S++VN +L +   
Sbjct: 177 FRGKRGVEHNVTLNDRRLANLLKRCMELPGQALFQYLDEDGQRHSVGSSEVNQFLQQLT- 235

Query: 265 GERFTAKDFRTWHGTVQALELTR-LACEPGRTAADGTRYSAKDILAAVAKQLGNTPAVCK 323
           G  FTAKD+RTW G+  AL L + LA EP   A    +     I+  VA +LGNTPAVC+
Sbjct: 236 GADFTAKDYRTWAGSSLALNLLKPLAWEPESEA----KRQVAAIVRQVATRLGNTPAVCR 291

Query: 324 KAYVHPAVL---ALGSALSDDDEDAATALFEKIAGRKTARPSRGLYAAERRLLAFLR 377
           + Y+HPAVL   ALG                ++A     R  +GL   E  LL FL+
Sbjct: 292 RCYIHPAVLEHYALG----------------RLANLPKNRVRKGLDPEEVALLLFLQ 332