Pairwise Alignments

Query, 416 a.a., DNA topoisomerase IB (poxvirus type) (EC 5.99.1.2) from Variovorax sp. SCN45

Subject, 338 a.a., DNA topoisomerase from Agrobacterium fabrum C58

 Score =  273 bits (697), Expect = 7e-78
 Identities = 159/359 (44%), Positives = 204/359 (56%), Gaps = 25/359 (6%)

Query: 20  PSKPTPIAN--GLVYVNPDMPGIRRLRHGERFRYRDAKGRWLRDVDEISRIRMLAIPPAY 77
           P  PT +    GL YVN   PGI R + G  F YR   G  L D  E+ RI+ L +PPAY
Sbjct: 2   PQPPTRLLAKIGLAYVNDQEPGIAREKRGRGFCYRLPGGDLLSDSVELKRIKSLGVPPAY 61

Query: 78  TQVWICPLPNGHLQATGIDARGRKQYRYHADWRVMKDETKFERLEAFALALPRIRARVAR 137
             VWIC  P GHLQATG DARGRKQYRYH DW  ++ ETKF +L++F  ALP IR R   
Sbjct: 62  RDVWICIDPAGHLQATGFDARGRKQYRYHPDWHALRGETKFFQLKSFGKALPAIRRRAMA 121

Query: 138 DLQPEKGQGNGQQAPGRGQVLAALVRLLDTTLLRIGNEEYASSNGSYGLTTLRNRHADVH 197
           D+        G+Q  G+   LAAL  LLD   LR+GN  Y  +NG+YG TTL  RH    
Sbjct: 122 DI--------GKQDHGQEMTLAALTLLLDAAYLRVGNRSYLETNGTYGATTLLKRHVS-F 172

Query: 198 GAALRLRFKGKSGVMHEARLDDPRVAKVVRQCQQLPGQALFQYAGEDGELHSVSSTDVND 257
           G  + LRF  K G   + +L  PR+ K++ +   LPG+ LF +   +  +HSV S+D+N 
Sbjct: 173 GETIELRFAAKGGQKVKRQLRHPRLQKILEEIADLPGKELFVWQDSENRVHSVDSSDLNA 232

Query: 258 YLAEAAPGERFTAKDFRTWHGTVQALELTRLACEPGRTAADGTRYSAKDILAAVAKQLGN 317
           YL+    G+  +AK FRTW GT+ A       C      A G + S K +  A A +L N
Sbjct: 233 YLS-GIGGQGISAKTFRTWGGTLAAF------CNAMEHVAAGEKPSIKGMCQAAAAELSN 285

Query: 318 TPAVCKKAYVHPAVLALGSALSDDDEDAATALFEKIAGRKTARPSRGLYAAERRLLAFL 376
           TPA+C+K+YVHPAVL + +      E+ A     +I  +  A+P  GL A ERRLLAFL
Sbjct: 286 TPAICRKSYVHPAVLDIAT------EEKARKKLGRIL-KVGAKPVSGLRADERRLLAFL 337