Pairwise Alignments

Query, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1042 a.a., Multidrug resistance protein MexB from Pseudomonas putida KT2440

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 526/1034 (50%), Positives = 727/1034 (70%), Gaps = 8/1034 (0%)

Query: 1    MARFFIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDS 60
            M +FFIDRP+FAWV+A+ I+LAGAL+I  LP+ QYP++AP +V I A Y GASA T+++S
Sbjct: 1    MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDES 60

Query: 61   VTQVIEQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQ 120
            V  +IEQ++ G D L+   S S S G+A I  TF  GT+ D+AQ+ VQN+L+  +S+LP+
Sbjct: 61   VVSLIEQELNGADNLLYFESQS-SLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPR 119

Query: 121  SVQSQGVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGS 180
             V  QG+ V K  T FL++ +L S+DG    T + D ++ +++D I R+ GVG  Q  GS
Sbjct: 120  PVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGS 179

Query: 181  GYAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKL 240
              AMRIW+DP KL  ++L P+DV+ A+ +QN +V+ G +G LP+ + Q +TA +  + +L
Sbjct: 180  ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQL 239

Query: 241  RTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANA 300
             + D+F  ++++++   G+ V +GDVAR+E+G++ Y   +  +G P+    V+L+ GANA
Sbjct: 240  SSPDEFAAIVLRANPD-GSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANA 298

Query: 301  LTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFL 360
            +  +  V+AK+ +L+ +FP  +K  + YDT+PFV++SIE+V  TL EAM+LV  +M+LFL
Sbjct: 299  METATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFL 358

Query: 361  QNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 420
            QNLR TL+P + VPV L+GTF V+  +G+S+N LT+FGMVLAIG+LVDDAIVVVENVER+
Sbjct: 359  QNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERI 418

Query: 421  MTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAML 480
            M EEGL PK+ATRK+M +I+GA+VGI LVL AVF+PMAF  GS GVIY+QFS+++  ++L
Sbjct: 419  MAEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSIL 478

Query: 481  LSVLVALTLSPALCATLLKPVQAGHHEEKRGFFGWFNRTFERNAERYRSGVGGLLHRGKR 540
             S  +AL+L+PALCATLLKPV  G H E++GFFGWFNR FE  +  Y+  V   L R  R
Sbjct: 479  FSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGR 538

Query: 541  SLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQQTMKSFEQYLSS 600
             LLVYA+L+ VLG  F +LPT+FLP EDQG  +  ++LP  A+  + +Q     E + + 
Sbjct: 539  YLLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAHNAE 598

Query: 601  QKEVSHYITLTGLS---GDQATGNAFITLKDWRERGGKAQDAASLARRFTMDMATRASNA 657
            +  V +   + G S     Q    AF TLKDW ERG     A S+A R TM   T+  +A
Sbjct: 599  EPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGAD-DSAQSIADRATMAF-TQLKDA 656

Query: 658  NVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALSQVRSNNLD 717
              + +LPP + GLG + GF+ +LQD GG+GH  L+ AR+Q L  A K   L+ VR  +L 
Sbjct: 657  IAYSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKVLTNVREASLA 716

Query: 718  DTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQADAPFRMQ 777
            ++PQ  ++ID R+A AL +S +DI   L  A+G SYVNDF N GR+++V VQA+   R Q
Sbjct: 717  ESPQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQ 776

Query: 778  PDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAGVSSGTAMD 837
             + +   HVRN + +MVP  AF  +RW  G  QL+RYNG  +  + G+PAAG SSG AM 
Sbjct: 777  VEDLLNIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAMA 836

Query: 838  AVERIMKQLPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYESWSVPFSVM 897
             VER++ QLP G G EW G S QERLSGSQAPLL A+S+L VFLCLAALYESWS+P +V+
Sbjct: 837  EVERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAVL 896

Query: 898  LVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQDEGMALVEA 957
            LVVPLGVLGAVLA  L G+ NDV+F+VGL+  +GLSAKNAILI+EFAK L D+G+   +A
Sbjct: 897  LVVPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVDQGVDAADA 956

Query: 958  TLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATATVLGIFFVP 1017
             +QA RLRLRPI+MTSLAF+ GV+PLA+++GA S S++AIG GV+GG+ +AT L + FVP
Sbjct: 957  AVQAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVFVP 1015

Query: 1018 LFFVAIRRFFAQRK 1031
            +FFV + R   +R+
Sbjct: 1016 VFFVVVMRLSGRRQ 1029