Pairwise Alignments

Query, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1042 a.a., Multidrug efflux RND transporter MexD from Pseudomonas putida KT2440

 Score =  976 bits (2524), Expect = 0.0
 Identities = 517/1050 (49%), Positives = 721/1050 (68%), Gaps = 14/1050 (1%)

Query: 1    MARFFIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDS 60
            M+RFFI RP FAWV+A+ I LAG L I +LP+ QYP++AP ++SI A+Y GASAK + +S
Sbjct: 1    MSRFFIHRPNFAWVVALFISLAGLLVIPSLPVAQYPNVAPPQISITASYPGASAKVMVES 60

Query: 61   VTQVIEQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQ 120
            VT +IEQ + G   L+   S++ S+G A + +TFE GT+ D+AQ+ VQN+L+QA++++PQ
Sbjct: 61   VTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQNRLKQAEARMPQ 120

Query: 121  SVQSQGVTVTKSGTDFLMIVSLISQDGS-ATATDIGDYISSSLLDVISRIDGVGDVQTLG 179
            +V +QG+ V ++ + FL+I +L S  G+    T + DY + ++ + + R+ GVG +Q   
Sbjct: 121  AVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLRVPGVGKLQFFA 180

Query: 180  SGYAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSK 239
            S  AMR+W+DP KL  Y L   D++SA+  QN +V AG  G+ P  + Q LTAT+  +  
Sbjct: 181  SEAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASEQELTATLAVQGT 240

Query: 240  LRTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGAN 299
            L T + F  ++++++   G+ VRLGDVAR+ +GSE+Y +++  +GHP+    V+LA GAN
Sbjct: 241  LDTPEAFAGIVLRANPD-GSSVRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGAN 299

Query: 300  ALTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLF 359
            A+  +  VK +LAELS FFP  ++  V YDT+ FV ++IE+V  TL EAMVLV L+M+LF
Sbjct: 300  AIQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLF 359

Query: 360  LQNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 419
            LQN+R TLVP+I VPV LLGT  ++ LLG+S+N +TMFGMVLAIG+LVDDAIVVVENVER
Sbjct: 360  LQNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENVER 419

Query: 420  LMTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAM 479
            LM EEGLSP EAT K+M +++GA++GI LVL+AVF+P+AF  GS GVIY+QFSV++  ++
Sbjct: 420  LMAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSI 479

Query: 480  LLSVLVALTLSPALCATLLKPVQAGHHEEKRGFFGWFNRTFERNAERYRSGVGGLLHRGK 539
            L S  +ALT +PALCATLLKPV  GHHE K GFFG FNR F R  ERY      L+ R  
Sbjct: 480  LFSGFLALTFTPALCATLLKPVPHGHHE-KAGFFGAFNRGFARVTERYSLLNSELVARAG 538

Query: 540  RSLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQQTMKSFEQYLS 599
            R +L Y  ++ VLG +++RLP +F+P ED G  +  V+LP  A+  +   T ++ E++L 
Sbjct: 539  RWMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDVQLPPGASRVRTDHTAEALEKFLM 598

Query: 600  SQKEVSHYITLTGLS----GDQATGNAFITLKDWRERGGKAQDAASLARRFTMDMATRAS 655
            S+  V++   ++G S    GD A   AF T KDW +R  KAQ A +         A    
Sbjct: 599  SRDAVANSFIVSGFSFSGQGDNAA-LAFPTFKDWSQRD-KAQSAEAETAAINAQFAANGD 656

Query: 656  NANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALSQVRSNN 715
             A   VM PP + GLG++ GF ++L D GG+G EAL+ AR+Q LA A  +P +       
Sbjct: 657  GAITAVM-PPPIDGLGNSGGFALRLMDRGGLGREALLAARDQLLARANGNPVILYAMMEG 715

Query: 716  LDDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQADAPFR 775
            L + PQ  + ID  KA AL +S   IN TL++A G + +NDF N GR ++V VQA+   R
Sbjct: 716  LAEAPQLRLHIDREKARALGVSFEAINSTLATAFGSAVINDFTNAGRQQRVVVQAEQGER 775

Query: 776  MQPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAGVSSGTA 835
            M P+SV R +  NAN E VPFSAF +++W  G  QL RYNG  S  + GD + G S+G A
Sbjct: 776  MTPESVLRLYAPNANGEQVPFSAFVTTQWEEGPVQLVRYNGYPSIRIAGDASPGHSTGQA 835

Query: 836  MDAVERIMKQLPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYESWSVPFS 895
            M  +ER++ +LP GIGY W G SYQE++S  QA  L+A++IL VFL L ALYESW++P +
Sbjct: 836  MAEMERLVSELPPGIGYAWTGLSYQEKVSSGQAASLFALAILVVFLLLVALYESWAIPLT 895

Query: 896  VMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQDEGMALV 955
            VML+VP+G LGAV A  L G+ NDVYF+VGL+  +GL+AKNAILIVEFAK+L ++G +L 
Sbjct: 896  VMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELWEKGYSLC 955

Query: 956  EATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATATVLGIFF 1015
            +A ++A RLR RPI+MTS+AF+ GV+PLA+++GAG+ S+RAIG GV+GG+ +AT+LG+ F
Sbjct: 956  DAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLSATLLGVVF 1015

Query: 1016 VPLFFVAIRRFFAQRKKAPAAPVLSALPEA 1045
            VP+ FV +        K   +PV  A+ EA
Sbjct: 1016 VPVCFVWVLTLL----KRKPSPVQQAVEEA 1041