Pairwise Alignments

Query, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  256 bits (654), Expect = 8e-73
 Identities = 150/365 (41%), Positives = 218/365 (59%), Gaps = 13/365 (3%)

Query: 17  RTGLACALAIGLLGAIAGCSGSSSSSSALPGAPQGLAAAQVGVVTVQPENQPVTTELSGR 76
           +TG     A+ +  A+AGC  ++    A        A+  V +VT+ PE   +  EL GR
Sbjct: 4   KTGSIRVGALAMAIALAGCEPAAEQDGAAN------ASYPVEIVTLAPEQVALAAELPGR 57

Query: 77  TRSRLSAEIRPQVGGIVQQRLFEEGALVKAGQVLYQLDPASYKAAYASAQASVAKSEATV 136
                 AE+R +V GIV  + FEEGA VKAG VL+Q+DPA +KAA A A+A +A+++A  
Sbjct: 58  VEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQ 117

Query: 137 NAAKVTARRNAELAKIEAVSKQTSEDSQATLQQAEADLGVARAALETARINLGFTRITAP 196
             A+   +R   L KIEAVS+Q  + + A L+ A A +  A+A ++ AR+NLG+  +TAP
Sbjct: 118 QEAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAP 177

Query: 197 IAGRIEASTVTPGALVTASQTTALTTVQQLDPVYVDVTQSTTELLQLQRELAAGTLKNGS 256
           I+GRI  +  T GALV   + T +  +QQLDP+Y+D TQS  + L+L++ L  G L   S
Sbjct: 178 ISGRIGRALATEGALVGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGAL---S 234

Query: 257 ADKAEASVKLLLEDGTTYAHAGRLQFSSVTVNEGTGAVTLRILVPNPERTLLPGMYMRAV 316
           AD    + ++   +GT +  +G L F+ V+V+ GTG V LR    N + TLLPGMY+R  
Sbjct: 235 ADSQRLTAQV---EGTDFQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVR 291

Query: 317 LEQGVAEGALLVPQQGVTRTANGDASALVVTSENKVEKRALKVSRAVGNRWQVIEGLKAG 376
             QG    A+LVPQ+ V R ++G A  LV T+    E RA++     G+RWQ+ EGL+ G
Sbjct: 292 TPQGTDNHAILVPQRAVQRGSDGQARVLVATN-GIAEARAVRTGVMQGSRWQITEGLEPG 350

Query: 377 ERVIV 381
           ++VIV
Sbjct: 351 DQVIV 355