Pairwise Alignments

Query, 791 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  238 bits (606), Expect = 1e-66
 Identities = 186/651 (28%), Positives = 281/651 (43%), Gaps = 74/651 (11%)

Query: 27  EALARPSAYELTVLSKNKAIDAKDILGRAFDVVIEFKDADGGTHERHCQGHAVRFVRAGH 86
           E ++ P   EL ++S    ID     G   D  + F   DG    R+  G    F +   
Sbjct: 29  EGISAPFELELKLISFENDID----FGHLLDKPVLFTILDGERPVRYVHGLVSSFSQGES 84

Query: 87  VGRHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKKTRADNVIGTH 146
                 Y   +         R+N RI Q K V ++L+ + +   I +++   + +    H
Sbjct: 85  GFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELRASMD----H 140

Query: 147 NPRRYCVQHQESDYGFLSRLLEDEGIYYWF----DAHGAPGTMHLSDASDIAHEKLPAN- 201
             R +CVQ  E+D  F++RL  +EG  Y F      H    T  L     I+H  + A+ 
Sbjct: 141 QVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKADH 200

Query: 202 --------------DTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDSDFK--AIKK 245
                         D++ + A    +     + R     Q  T +   RD  F   A ++
Sbjct: 201 EDEGFGDDDEPVGPDSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPAYRQ 260

Query: 246 KLGADADASGEHELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWALTPWPDVA 305
           +  A A    EH+    E F++PG Y     G+   + R   LR   D   A     DV 
Sbjct: 261 EHRA-AGPFLEHQSKDYEYFDYPGRYKRDAVGKPFTENRITALR--HDVRIAEVQGDDVR 317

Query: 306 A--GRGFKFEGDPDGTRNGEYIIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDD 363
              G  F     P    N  + ++       H G +  S                 L+++
Sbjct: 318 LQPGLSFTLTDHPREDLNVHWRVST----VHHEGSQPTS-----------------LQEE 356

Query: 364 AVNADTLQVLEDLIAATPALAAGQPGTSAFLLTVMPADRPFRAPRLTPRVTMPGPQTAIV 423
           A  AD     E      P     +P                 AP   PRV   GP  A V
Sbjct: 357 AAGADQGTRYEQKAVLVPGRTEWRP-----------------APLPKPRVD--GPHMATV 397

Query: 424 VGPKGDELHVDDHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEVI 483
           VGP G+E++ D+ GRVKV F WDR  +++E S+CW+RVSQ WAG  WG    PRIGQ+VI
Sbjct: 398 VGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQDVI 457

Query: 484 VDFLNGDPDRPIIMGRVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKEQ 543
           + ++NGDPD+P+I GR Y  +Q  P+         T  +       FNE RFED+ G+E+
Sbjct: 458 IHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTIKSQTHKGDGFNELRFEDELGQEE 517

Query: 544 VYLHAERNLDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITIHGKRELT 603
           V++HA+R+ +  V+ DET  VG+DR + V +DE + I +DRTE V  +E ITI     L 
Sbjct: 518 VFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDAALD 577

Query: 604 VDKDQYVTIKTNHSEEVTGWKSTWVTGNHRLSTSANHDQTVQGNETIDVSG 654
           + ++  + I  +  E +   +   +  NH      N +Q V+G+  ++  G
Sbjct: 578 IGRNHTIRIAKDRVENIGNHRHDQIAANHHTRIGGNFEQRVEGHAELEARG 628