Pairwise Alignments

Query, 792 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  200 bits (508), Expect = 2e-55
 Identities = 167/631 (26%), Positives = 267/631 (42%), Gaps = 67/631 (10%)

Query: 14  VNGELMFWRIAGHEALARASSYELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRH 73
           V+ +L      G E L +     + V+S++ +LD   +L +     + F +AD   H   
Sbjct: 17  VDIDLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQP--AYLAFGEADDGLH--- 71

Query: 74  CQGHAVRFMRAGHVGRYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKR 133
             G      R     R   Y + L      L  R + RI Q + V +++  V E   I  
Sbjct: 72  --GQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILA 129

Query: 134 FKKTRADNVIGTHEPRRYCVQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDL 193
                    +  + PR +CVQ+ ESD  F+ RL E+EGI+Y F  H     + +      
Sbjct: 130 DAYAFELGPV-VYPPRTFCVQYAESDLHFIQRLCEEEGIHYHF-RHSVDAHLLVFGDDQT 187

Query: 194 AHDKLPAASTLNFMPAGATEPRDNEISRWISERQFDTGKYASRDSNFKSIKKKLEATGGE 253
              +LP      +   G        I R+       + K   RD +F+     L  + G 
Sbjct: 188 VFPRLPVQC---YSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGA 244

Query: 254 PDKCELSEFEAFEFAGGYFSGGDADDKGK---LRGEEIGAR-RQRHFALTRWPDVAAGRS 309
                L +++       Y +G  A  +GK    R  E+  R R R    +  P + +G  
Sbjct: 245 ASTLPLEDYQ-------YPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHF 297

Query: 310 FTFKGDPDAARDGDYVIAACTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCADTLP 369
              +  PD + +  ++I +      H GY+  P+                          
Sbjct: 298 LEIRDHPDPSCNDLWLITS----VRHEGYQ--PQ-------------------------- 325

Query: 370 VLRELVAQTPALRAGRNGDSAFLLTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDGEEI 429
           VL E    T   +  RN       T  P     RP     +  + G Q+A V GP GE++
Sbjct: 326 VLEEATPATDVFQGYRN-----RFTATPWQAVHRPSLRHTKPTINGSQTATVTGPAGEDV 380

Query: 430 HADDFGRVKVHFHWDRYDKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLNGDP 489
           H D +GRVKV FHWDR D++++KS+CW+RV+  WAG G+G   IPR+G EV+V FL+GDP
Sbjct: 381 HCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGFGATMIPRVGMEVLVTFLDGDP 440

Query: 490 DRPLVIG----RVYNDDQPIPFGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLH 545
           DRPL+ G     ++    P+P    T+S  R+ S+  G  +  NE   ED++G E VYL 
Sbjct: 441 DRPLINGCLPNALHRPTYPLPL-HKTRSVLRSSSSLGGEGS--NELYLEDRRGEELVYLR 497

Query: 546 AEKNQDIEVENDETHWVGHDRKKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNN 605
           A+++ +  + +D    V  +R++ +    T H+K +    V  + K+ +  +    V  +
Sbjct: 498 AQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDRKVLLKASDYLDVHGD 557

Query: 606 ETISIGVNRTETVGSNETITIGSNRTITVGA 636
               +        G    +  G++  I  GA
Sbjct: 558 SRTHVAQTLVIEAGQQLHLKSGASLVIDAGA 588



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 682 VGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLS--------VGKN 733
           +G +    +   R   +    TT++ S+E R V   R   +   D L         V + 
Sbjct: 506 IGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVTGDRKVLLKASDYLDVHGDSRTHVAQT 565

Query: 734 LVISAGDSISITTGSASITMKKDGTIVIK--GKDITIDASGKINAK 777
           LVI AG  + + +G AS+ +     + +K  G+ + I A G  +++
Sbjct: 566 LVIEAGQQLHLKSG-ASLVIDAGAELSLKAGGEHLVIQAGGIFSSR 610