Pairwise Alignments

Query, 792 a.a., VgrG protein from Variovorax sp. SCN45

Subject, 725 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  247 bits (630), Expect = 2e-69
 Identities = 205/715 (28%), Positives = 307/715 (42%), Gaps = 69/715 (9%)

Query: 27  EALARASSYELTVLSKSRTLDARDILGRAFDVSIEFEDADGARHVRHCQGHAVRFMRAGH 86
           EA++     +L ++S    +D   +L    D  + F    G R +R+  G    F +   
Sbjct: 29  EAISSPFRLQLELVSFEDDVDFAQLL----DKPVLFTLWQGERPLRYVHGLVSTFSQGET 84

Query: 87  VGRYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKRFKKTRADNVIGTH 146
                 YR  +         R N RI Q K V ++L+ + +   +  ++    D     H
Sbjct: 85  GFDRTRYRALVEPVLARAGLRSNWRIFQQKTVPQILEIMLKRQGVNAYELKCLD----PH 140

Query: 147 EPRRYCVQHQESDYQFLSRLLEDEGIYYWFD-----------------AHDAPGTMHLSD 189
           + R +CVQ  E+D  F++RL  +EGI Y FD                    + G +   D
Sbjct: 141 QVREFCVQAGETDLDFMARLAAEEGIVYRFDHTPKQHLLIITDRLLALGQISRGAIKTDD 200

Query: 190 ASDLAHDKLPAASTLNFMPAGATEPRDNEISRWISERQFDTGKYASRDSNFKSIKKKLEA 249
             +  H+       + +   G  +     + R     Q  T +   RD  F   + + E 
Sbjct: 201 EDEGFHNDDVGPDQVLYRSVGGGDQARPCLRRLRYSEQVRTARQVQRDYTFTHPQYRQEH 260

Query: 250 TGGEPDKCELS-EFEAFEFAGGYFSGGDADDKGKLRGEEIGARRQRHFALTRWPDVAA-- 306
              +      S  +E F++ G Y    DA             R     A     DV    
Sbjct: 261 QAYDNSNTHQSLNYERFDYPGRYKR--DAVGVPFTATRLTALRHDARIAEVEGDDVRLQP 318

Query: 307 GRSFTFKGDPDAARDGDYVIAACTFVASHSGYEGVPEVGDPVPLDVLLREALEDDAVCAD 366
           G SFT    P      D  +   T    H G +                 +L+++A  AD
Sbjct: 319 GLSFTLIEHPRE----DLNVHWRTVSVHHEGTQFT---------------SLQEEA--AD 357

Query: 367 TLPVLRELVAQTPALRAGRNGDSAFLLTVMPIDVPFRPPRLTPRVRMPGPQSAIVVGPDG 426
           +    R    Q   L  GR                +RP  L P+ R+ GP  A VVGP G
Sbjct: 358 SQQGTR--YKQEALLVPGRT--------------EWRPAPL-PKPRIDGPHMATVVGPKG 400

Query: 427 EEIHADDFGRVKVHFHWDRYDKSNEKSTCWVRVSQPWAGKGWGGYFIPRIGQEVIVDFLN 486
           EEI+ D +GRVKV F WDR  ++NE S+CWVRVSQ WAG  WG   IPRIGQ+VI+ ++N
Sbjct: 401 EEIYCDQWGRVKVSFPWDRESENNEFSSCWVRVSQGWAGGSWGSMAIPRIGQDVIIQYVN 460

Query: 487 GDPDRPLVIGRVYNDDQPIPFGSHTQSGFRTRSTPKGSAANCNEFRFEDKKGSEQVYLHA 546
            DPD+P++ GR Y  +Q  P+         T  +        NE RFED+ G ++V++HA
Sbjct: 461 ADPDQPMITGRTYCGNQLPPYDLPEHKTRMTIKSQTHKGEGFNELRFEDELGRQEVFIHA 520

Query: 547 EKNQDIEVENDETHWVGHDRKKTVDHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNE 606
           E++Q+  V++DET  VG+DR + V+ DET+ +  DR E +  +E + IG NR   +GN++
Sbjct: 521 ERDQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDD 580

Query: 607 TISIGVNRTETVGSNETITIGSNRTITVGASETATVALQRTHTVGVNETITVGAAQEITV 666
           ++SIG N   T G +    +G++R     A+ T  +   R   V  + T+  G A   T 
Sbjct: 581 SLSIGRNHRITTGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTT 640

Query: 667 GAVQAVTVGASQTISVGANQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTS 721
             V  + V  S TI   A      GA  ++D  A       S +A    +  STS
Sbjct: 641 -KVYDIQVSESLTIRSPAGLLRVDGAGITLDGLALAFKGPVSQQATGSNRVTSTS 694



 Score = 49.7 bits (117), Expect = 6e-10
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 638 ETATVALQRTHTVGVNETITVGAAQEITVGAVQAVTVGASQTISVGANQSSSIGANRSVD 697
           ET  V   RT  V  +ETI++G  +   +   ++V +G ++   +G + S SIG N  + 
Sbjct: 532 ETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSLSIGRNHRIT 591

Query: 698 VGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLVISAGDSISITTG------SASI 751
            G +    VG+          +  +G      V  +  +  G++I  TT       S S+
Sbjct: 592 TGKDRIEQVGNHRQDITKANHTVEIGGHREQVVAGHSTLQTGEAIRHTTKVYDIQVSESL 651

Query: 752 TMKKD-GTIVIKGKDITID 769
           T++   G + + G  IT+D
Sbjct: 652 TIRSPAGLLRVDGAGITLD 670



 Score = 40.0 bits (92), Expect = 5e-07
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 685 NQSSSIGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLVISAGDSISI 744
           +Q++ +  + +  VG + T  V  DE  S+G+ R   + +D+S+ +G+N V   G+  S+
Sbjct: 523 DQNNIVKHDETTRVGNDRTERVERDETISIGQDRREDIARDESVGIGQNRVHEIGNDDSL 582

Query: 745 TTG-SASITMKKD 756
           + G +  IT  KD
Sbjct: 583 SIGRNHRITTGKD 595