Pairwise Alignments

Query, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1387 a.a., DNA-directed RNA polymerase subunit beta from Rhodanobacter sp000427505 FW510-R12

 Score = 1797 bits (4654), Expect = 0.0
 Identities = 909/1394 (65%), Positives = 1093/1394 (78%), Gaps = 39/1394 (2%)

Query: 6    AYSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAF 65
            AYS+TE+KRIRK FG R  V+ +P LL +Q D+Y  FLQ  + PKQR  +GL AA  + F
Sbjct: 3    AYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRGDKGLHAALKSVF 62

Query: 66   PIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVV 125
            PI S++G   +++++Y L +PAFD REC+ RG+TF + +R  V+L+IYD++S  S+ KVV
Sbjct: 63   PISSYSGNAALEYVDYRLGEPAFDERECRNRGMTFGAPLRTTVRLVIYDKDSPASK-KVV 121

Query: 126  KEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185
            K +KEQEVYMGE+PLMTD G+FIINGTERVIVSQLHRSPGVFF+HD+GKTHSSGKLLFSA
Sbjct: 122  KYIKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA 181

Query: 186  RVIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMD 245
            RVIPYRGSWLDFEFDPKD L+ R+DRRRK+PVT+LL+A+G N E +L  FF ++ F L +
Sbjct: 182  RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLGIFFEHNVFHLGN 241

Query: 246  SGAQ-MEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFL 304
             G   +E V+ERLRGE   FD+    GKV+V   KR+TARH R+L     T + VP+D+ 
Sbjct: 242  KGGTTLELVAERLRGETLSFDLAI-GGKVLVEAGKRITARHVRQLAAENITALEVPDDYP 300

Query: 305  VGRVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLR 364
            VGR++A +IVDA +GE+LA ANDE+T   ++  R AG++ V  +Y N+LD+GAYIS TLR
Sbjct: 301  VGRIVATDIVDAKTGELLASANDEITAEQMENFRKAGIEVVPTLYVNDLDRGAYISHTLR 360

Query: 365  IDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRD 424
            ID T     A V IYRMMRPGEPPT+DA Q LF  LF+  D YDLS VGRMKFN +VGR 
Sbjct: 361  IDNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFFNLFFTFDRYDLSAVGRMKFNRRVGRK 420

Query: 425  ESTGPMVL----------------------TNEDILAVVKILVDLRNGNGEVDDIDHLGN 462
            E  GP VL                       + DIL V+K+L+D++NG+G VDDIDHLGN
Sbjct: 421  EILGPGVLYDHKYFSERKEEESQRLVKEQGESSDILDVLKVLIDIKNGHGTVDDIDHLGN 480

Query: 463  RRVRCVGELAENQYRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQ 522
            RRVR VGE+AEN +R GL R+E+AV+ERL  AE + L P DLIN+KP++AA+KEFFG+SQ
Sbjct: 481  RRVRSVGEMAENTFRIGLVRVERAVRERLSLAEADGLTPQDLINAKPVAAAVKEFFGSSQ 540

Query: 523  LSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIG 582
            LSQFMDQ NPLSE+THKRRVSALGPGGLTRERAGFEVRDVH THYGRVC IETPEGPNIG
Sbjct: 541  LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG 600

Query: 583  LINSLALYARLNEYGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLT 642
            LINSLA+YAR N YGF+ETPYR+V +SKVT+++DYLSAIEEG +VIAQAN+ LDK G   
Sbjct: 601  LINSLAVYARTNAYGFLETPYRKVANSKVTDKVDYLSAIEEGDHVIAQANSPLDKHGAFL 660

Query: 643  GDLVSAREAGESILVGAERIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAV 702
             D VS R  GES L  A  + YMDVSP Q VSVAA+LVPFLEHDDANRALMGANMQRQAV
Sbjct: 661  EDFVSCRFRGESELRPAAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV 720

Query: 703  PVLRPEKPMVGTGIERVSAVDSGTVVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDI 762
            P LR + P+VGTGIER  A DSG +V+A RGG++D VDA R+VVRVN+ E    + GVDI
Sbjct: 721  PTLRSQTPLVGTGIERAVARDSGVIVSAKRGGVIDQVDAARIVVRVNEEEVGGNDAGVDI 780

Query: 763  YNLIKYQRSNQNTNIHQRPIVKRGDKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGY 822
            Y L KY RSNQNTN++QRP+V  GD +AKGD +ADG+STDLGELALGQNMLIAFMPWNGY
Sbjct: 781  YTLTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGY 840

Query: 823  NFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGI 882
            NFEDSIL+SERVV EDRYTSIHIEEL  +ARDTKLGAEEIT DIPN+ EQ L RLDESGI
Sbjct: 841  NFEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGI 900

Query: 883  IYVGAEVQPGDTLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVID 942
            +Y+GAEV+ GD +VGKVTPKGE+ LTPEEKLLRAIFGEKASDVKD+SLRV  G  GTVID
Sbjct: 901  VYIGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVID 960

Query: 943  VQVFTREGITRDKRAQQIIDDELKRFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNK 1002
            VQVFTR+GI +DKRA+QI + E+KR R DL+DQ RI+E   + R+   L GK A  GP  
Sbjct: 961  VQVFTRDGIEKDKRAKQIEETEVKRVRKDLDDQFRILEVAIYSRMRTQLVGKSAMSGPGG 1020

Query: 1003 LAKGTKLDKAYLSSVEKFHWFDIRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLT 1062
            L +G ++  AYL  ++K  WF +   ++EV   LE     +++ +  FD  F+EK+ K+T
Sbjct: 1021 LKRGAEITDAYLDGLKKDDWFKVNVKDEEVTEFLERAAEQIKRHKEEFDKRFKEKQGKIT 1080

Query: 1063 QGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDIC 1122
            QGD+L  GVLKMVKV+LAVKRR+QPGDKMAGRHGNKGVVS +VPVEDMP+MA+G   DIC
Sbjct: 1081 QGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMANGEAVDIC 1140

Query: 1123 LNPLGVPSRMNVGQVLEVHLGWAGKGIGQRIGDLLQQEAKVAELRKFMEQLYN----GSG 1178
            LNPLGVPSRMN+GQ+LEVHLGWA KG+G++I  +++ + KVAE+RKF++Q+YN    G+ 
Sbjct: 1141 LNPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMIEAQEKVAEIRKFLDQIYNSHVAGAV 1200

Query: 1179 RPEELEQLSDTELLAMAANLQSGATFATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTET 1238
            +  +L+ L+D E+ A+A NLQ G   ATPVFDGA E EI+ MLKLA          L E+
Sbjct: 1201 QHVDLKSLTDKEIFALATNLQEGVPMATPVFDGAEETEIKAMLKLA---------DLPES 1251

Query: 1239 RTQAYLFDGRTGDQFERPVTVGYMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFG 1298
              Q  L+DGRTG+ F+RPVTVGYMH+LKL+HLVDDKMHARSTGPYSLVTQQPLGGKAQFG
Sbjct: 1252 -GQTMLYDGRTGEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFG 1310

Query: 1299 GQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVL 1358
            GQRFGEMEVWALEAYGAAY LQEMLTVKSDDVQGR ++Y++IV G H + AGMPESFNVL
Sbjct: 1311 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMSAGMPESFNVL 1370

Query: 1359 VKEIRSLGLDIELE 1372
            VKEIRSL +DI+LE
Sbjct: 1371 VKEIRSLAIDIDLE 1384