Pairwise Alignments

Query, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas putida KT2440

 Score = 1866 bits (4833), Expect = 0.0
 Identities = 936/1391 (67%), Positives = 1131/1391 (81%), Gaps = 6/1391 (0%)

Query: 1    MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MK LL+L K     E FDAI+IG+ASPE IRSWSFGEVKKPETINYRTFKPERDGLFCAK
Sbjct: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEV   KVRRERM HI+LA+P AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120

Query: 121  PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM 180
            PSR+GL++DMTLRDIERVLYFE+YV+ DPGMT L+K  +++++ Y    +E+GD+F A+M
Sbjct: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180

Query: 181  GAEGIKDLLEGIELDSEIERLRGDL--TGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLD 238
            GAE +++LL  I+L+ EI RLR ++  T SE K+KK SKRLK++EAF+ SG  PEWMVL 
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 239  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQ 298
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN+RL+RLL+L AP+II RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 299  EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT 358
            EAVD+LLDNGRRG+A+TG+NKR LKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGPT
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 359  LKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHP 418
            L+LHQCGLPK MALELFKPFIF +LE  G+ATTIKAAKK VE   P VWD+L EVI+EHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 419  VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEA 478
            V+LNRAPTLHRLGIQAFEP+LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL++EAQ+EA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 479  RTLMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDAN 538
            R LM+++NN+L PA+GEP IVPSQDVVLGLYY TR+ IN KGEG +F+D+ EV R   A 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 539  EVELTARVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKK 598
            E  L A++ VRI E  K ++ G    +T +VDTTVGRALL +++P GLP+  +N+ +KKK
Sbjct: 541  EAALHAKIKVRINETVKERD-GSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKK 599

Query: 599  EISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIDRSAK 658
             ISKLIN  +R  GLKETV+FAD+L+  GF  +T +G+SI ++D ++P EK  II  +  
Sbjct: 600  AISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATD 659

Query: 659  EVKEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESF 718
            EVKEIE QY SGLVT GE+YNKV+D+W KA DEVSK MMA LSK+KVIDR GKEVEQESF
Sbjct: 660  EVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESF 719

Query: 719  NSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGA 778
            NS+YMMADSGARGSAAQIRQ+AGMRGLMAKPDGSIIETPITANFREGL+VL+YFISTHGA
Sbjct: 720  NSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGA 779

Query: 779  RKGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRI 838
            RKGLADTALKTANSGYLTRRLVDV QDLVVTE DCGT  G +M   +EGG+V+E L +R+
Sbjct: 780  RKGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERV 839

Query: 839  LGRSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICATCY 898
            LGR  A DV  P    V++ AG + DE  +E +E   +DEV VR+ + CETR+GICA CY
Sbjct: 840  LGRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCY 899

Query: 899  GRDLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIG 958
            GRDL RG  +NIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASR + A SV+ K+ G + 
Sbjct: 900  GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVR 959

Query: 959  FNATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLA 1018
             +  ++ V  + G LV +SRSGE+ I DE GRERER+K+PYGA ++VK  ++++AG ++A
Sbjct: 960  LH-NLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVA 1018

Query: 1019 NWDPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAA-KVVRPQV 1077
             WDP T PI+TE  G   F  +EE +T+ +Q DE+TGL+ + V+D K R AA K +RP +
Sbjct: 1019 KWDPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAI 1078

Query: 1078 KLIDAQGQEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGL 1137
            K++DA G+++ +PGTD       P  ALV + DG  +G G+V+ARIP E  KTRDITGGL
Sbjct: 1079 KMVDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGL 1138

Query: 1138 PRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGT-VWEDLVPKEKNILV 1196
            PRVA+LFEAR PK+  +LAE++GT++FGKETKGK RL IT  +G+  +E+L+PK +++ V
Sbjct: 1139 PRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNV 1198

Query: 1197 HEGQVVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVR 1256
             EG+ VN+GE + DGP+DP DILRLLG   LA+YIV+E+QDVYRLQGVKINDKHIE I+R
Sbjct: 1199 FEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILR 1258

Query: 1257 QMLRRVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDS 1316
            QMLR+V +   G++ +I G+Q+E +++L  N+ L +E K  + FT +LLGITKASLST+S
Sbjct: 1259 QMLRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTES 1318

Query: 1317 FISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDEA 1376
            FISAASFQETTRVLTEAA+ GKRD LRGLKENV+VGRLIPAGTG+AYH  RK +   D+ 
Sbjct: 1319 FISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKP 1378

Query: 1377 ERRAIAESEAA 1387
             R + +E EAA
Sbjct: 1379 LRVSASEVEAA 1389