Pairwise Alignments

Query, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' (NCBI) from Escherichia coli BW25113

 Score = 1818 bits (4709), Expect = 0.0
 Identities = 935/1407 (66%), Positives = 1115/1407 (79%), Gaps = 13/1407 (0%)

Query: 1    MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60
            MK LL   K  T  E FDAIKI +ASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHI+LA+P AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKM 180
            PSR+GL+LDM LRDIERVLYFE+YV+ + GMT L++  I++E+ Y    +E+GDEF AKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEGIKDLLEGIELDSEIERLRGDL--TGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLD 238
            GAE I+ LL+ ++L+ E E+LR +L  T SE K KK +KR+K+LEAF +SG KPEWM+L 
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 239  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQ 298
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN+RL+RLL+L AP+II RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 299  EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT 358
            EAVD+LLDNGRRG+A+TG+NKR LKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 359  LKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHP 418
            L+LHQCGLPK MALELFKPFI+ +LE  G+ATTIKAAKK VE    VVWDIL+EVI+EHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 419  VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEA 478
            V+LNRAPTLHRLGIQAFEP+LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL++EAQ+EA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 479  RTLMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDAN 538
            R LM+++NN+L PA+GEP IVPSQDVVLGLYY TRD +N KGEG++ +   E +R   + 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540

Query: 539  EVELTARVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKK 598
               L ARV VRITEY K+   GE    TSL DTTVGRA+L  I+PKGLP+S +N+AL KK
Sbjct: 541  LASLHARVKVRITEYEKD-ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599

Query: 599  EISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIDRSAK 658
             ISK++N  +R  GLK TV+FAD+++  GF  A ++G S+ IDDM++P +KH II  +  
Sbjct: 600  AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659

Query: 659  EVKEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESF 718
            EV EI++Q+ SGLVT+GERYNKV+DIW  A D VSK MM  L  + VI+R G+E +Q SF
Sbjct: 660  EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719

Query: 719  NSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGA 778
            NSIYMMADSGARGSAAQIRQ+AGMRGLMAKPDGSIIETPITANFREGLNVL+YFISTHGA
Sbjct: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779

Query: 779  RKGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRI 838
            RKGLADTALKTANSGYLTRRLVDV QDLVVTE DCGTH G +M  ++EGG+V E LRDR+
Sbjct: 780  RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839

Query: 839  LGRSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICATCY 898
            LGR  A+DVL P    +L+    +  E   + LE   VD VKVR+ ++C+T FG+CA CY
Sbjct: 840  LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899

Query: 899  GRDLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIG 958
            GRDL RG +IN GEA+GVIAAQSIGEPGTQLTMRTFHIGGAASRAA  SS++ K+ GSI 
Sbjct: 900  GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959

Query: 959  FNATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLA 1018
              + ++ V NS G+LV+ SR+ E+ + DE GR +E +KVPYGA L     +Q+  G  +A
Sbjct: 960  L-SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018

Query: 1019 NWDPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGA-AKVVRPQV 1077
            NWDP T P+ITE +G  +F ++ +G T+ +Q DE+TGLS+LVV+D   R A  K +RP +
Sbjct: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078

Query: 1078 KLIDAQGQEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGL 1137
            K++DAQG +V IPGTD       P  A+VQ+ DG  +  G+ LARIP E   T+DITGGL
Sbjct: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138

Query: 1138 PRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGT-VWEDLVPKEKNILV 1196
            PRVA+LFEAR PK+  +LAE++G VSFGKETKGK RL IT  +G+  +E+++PK + + V
Sbjct: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198

Query: 1197 HEGQVVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVR 1256
             EG+ V +G+ + DGP  P DILRL G   + RYIV+EVQDVYRLQGVKINDKHIEVIVR
Sbjct: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258

Query: 1257 QMLRRVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDS 1316
            QMLR+  + N G + ++ GEQVE S +   N  L A GK+ AT++  LLGITKASL+T+S
Sbjct: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318

Query: 1317 FISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDEA 1376
            FISAASFQETTRVLTEAA+ GKRDELRGLKENVIVGRLIPAGTG AYHQ R  + A  EA
Sbjct: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA 1378

Query: 1377 ER--RAIAESEAAEL-----AGSGDSD 1396
                +  AE  +A L     AG G SD
Sbjct: 1379 PAAPQVTAEDASASLAELLNAGLGGSD 1405