Pairwise Alignments

Query, 169 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  160 bits (404), Expect = 1e-44
 Identities = 79/159 (49%), Positives = 108/159 (67%)

Query: 11  VNTLYSDHHPWLLDMLRRKLGNLDNAADLAQDTFVRILSSNEAGPLREPRAYLTTVASRI 70
           V  LY  HH WL   LR ++G  ++AADLAQDTFVR+L + +  PL+EPRAYL+++A  +
Sbjct: 12  VALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGL 71

Query: 71  AAQYFRRLALERTYLEAIAHLPEASAPSPETRLLVVEALAAVSRVLDGLKPHVREIFLMA 130
               FRR ALER Y E +AHLPEA  PS E +L+++++L  + R L  LKP VR+ FL+A
Sbjct: 72  MIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLA 131

Query: 131 QLDGLTYSQIAQQLGVTINVVQKAMLKAYRHCYDAVYGD 169
           QLDGL+  Q+AQ+LGV+   V++ + KA   CY   Y D
Sbjct: 132 QLDGLSIVQVAQRLGVSRATVERDLAKALGACYRLRYAD 170