Pairwise Alignments

Query, 474 a.a., Type I secretion system, outer membrane component LapE from Variovorax sp. SCN45

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 106/424 (25%), Positives = 177/424 (41%), Gaps = 56/424 (13%)

Query: 59  STQPLTLNEAVRQSVARHPSISDAISTLAQQAGGVDVARAGYYPQVRVGVGGGTSNA--- 115
           ST    L    +++V  +  ++ A +    +   V  ARAG  P +  G     +     
Sbjct: 26  STVKTDLVSVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRTKLD 85

Query: 116 -PASQGGSTGTVASASVSQMLYDFGKVGGAVAQSQALVQRQQAAILKQIDAVAQQAAEAV 174
            P+     +G   SA+++Q ++          ++    Q Q A  + +  A+   A E  
Sbjct: 86  EPSITSNRSGNSWSATLAQPIF----------RADRWFQLQAAEAVNEQAALELSATEQN 135

Query: 175 VMAHRYQSLLAI--AQDQVQAVQAV-------LETARLRANAGLSTKADPIQAESRVDSA 225
           ++    Q+  A+  AQD + A +A        L+ +  R + GLS K D +Q+++  D+A
Sbjct: 136 LILQTAQNYFAVLRAQDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTA 195

Query: 226 RANLLQVKSQLAQWRERLGTLLG------PGVVP--PELAPLPDDLARALSVDAQPDASL 277
           RAN +  + Q+    E L TL         GVV   P   P P+D    +    + + +L
Sbjct: 196 RANRIIAERQVQDAFEALVTLTNREYTSIQGVVHSLPVQVPTPNDAKAWVETAGRQNLNL 255

Query: 278 LPDVLAAEAERRAASAQLEVARANRYPTLTVDAAV----NKAMGGINPATL----ERNGT 329
           L    A      AA   L   +A   PTL   A      N ++G  NP+ L      +  
Sbjct: 256 LATNYAVS----AAEETLRQRKAGHAPTLDAVAKYQKGDNDSLGFTNPSQLGVRYSGDVE 311

Query: 330 YHTVMLNLTSVIYQGGALDAQVRAATAAEDAARMRIETARLNAGDQARNYREQVVGAQAR 389
             +V L L   IY GG   +QVR A      +  + E+ R    +  RN    V      
Sbjct: 312 QTSVGLQLNIPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQVVENTRNLHRAV---NTD 368

Query: 390 LGVLADRRRSIV---EARDLYREQYTLGTRSILDLLNAEQEIYQAAAEQEAVVHDLWASR 446
           +  +  R++SI+    A +     Y +GTR+I+D+L+A++++Y +       V D   SR
Sbjct: 369 VEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTS-------VRDYNNSR 421

Query: 447 VGYI 450
             YI
Sbjct: 422 YDYI 425



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 50/227 (22%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 67  EAVRQSVARHPSISDAISTLAQQAGGVDVARAGYYPQVRVGVGGGTSNAPASQGGSTGTV 126
           E +RQ  A H    DA++    Q G  D    G+    ++GV           G    T 
Sbjct: 267 ETLRQRKAGHAPTLDAVAKY--QKGDND--SLGFTNPSQLGV--------RYSGDVEQTS 314

Query: 127 ASASVSQMLYDFGKVGGAVAQS-QALVQRQQAAILKQIDAVAQQAAEAVVMAHRYQSL-- 183
               ++  +Y  G     V ++ Q L Q +Q     Q +++ +Q  E     HR  +   
Sbjct: 315 VGLQLNIPIYSGGLTSSQVREAYQRLSQSEQ-----QRESLRRQVVENTRNLHRAVNTDV 369

Query: 184 --LAIAQDQVQAVQAVLETARLRANAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRE 241
             +   +  + + Q+ LE   +    G     D + A+ ++ ++  +     S+     +
Sbjct: 370 EQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSVRDYNN--SRYDYILD 427

Query: 242 RLGTLLGPGVVPPELAPLPDDLARALSVDAQPDASLLPDVLAAEAER 288
            L      G + P+      DL R L  D  PD   LP  LAA A +
Sbjct: 428 NLSLKQAAGTLSPQDL---QDLKRYLKPDYNPDKDFLPPDLAAAAAK 471