Pairwise Alignments

Query, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score =  479 bits (1234), Expect = e-139
 Identities = 286/692 (41%), Positives = 404/692 (58%), Gaps = 48/692 (6%)

Query: 5   LNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQS-GLEPQRIAAITFTNKAAAE 63
           LNP Q EA +Y+ GP LVLAGAGSGKT VIT KI  LIQ+ G+  Q I A+TFTNKAA E
Sbjct: 4   LNPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAARE 63

Query: 64  MRERAKDLIGK-DARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDDVTKILKDA-- 120
           M+ER   L+   + R + VCTFH LG+ ++R++   LG K  FSI D  D+  +L D   
Sbjct: 64  MKERVATLLRPGEGRGLTVCTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123

Query: 121 ------GGTTDIATARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQA 174
                  G  +I         I  WKN  +   +A   A +  E+  A +  HY+  L+A
Sbjct: 124 KEYSGDDGIDEIKNM------IGAWKNDLVLPPEALEKARNPREQTAAIVYTHYQRTLKA 177

Query: 175 YQSVDFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQDTNATQYEVLKALAGERGHF 234
           + +VDFDDLI  P+KL  E PEV  +WQ  + ++LVDEYQDTNA+QY ++K L G R  F
Sbjct: 178 FNAVDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGMRNQF 237

Query: 235 TAVGDDDQSIYGWRGATLDNLRKLPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKL 294
           T VGDDDQSIY WRGA  +NL  L  D+P+LK++ LEQNYRSTS ILR AN +I  NP  
Sbjct: 238 TVVGDDDQSIYAWRGARPENLMLLKEDYPSLKIVMLEQNYRSTSRILRCANVLIANNPHA 297

Query: 295 FPKTLFSELGEGEPVRIVDADSELHEAERAVARIVSLRAGDATTQGKQYKEFRDFAILYR 354
           F K L+SE+G G+ +R++   +E  EAER    I++L         +  + + DFAILYR
Sbjct: 298 FEKQLWSEMGVGDEIRVIRCKNEEAEAERVAMEILTLHL-------RTNRPYSDFAILYR 350

Query: 355 ANHQARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPK 414
            N+QA++ E  L+  Q+PY++SGG SFF R E+KDL  + RL VN DDD A+LR I  P+
Sbjct: 351 GNYQAKLIELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPR 410

Query: 415 RGIGHTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRT 474
           R IG TTL  LG++A++  +S++ A     L   +  R  E +  F  +++ +    R  
Sbjct: 411 REIGSTTLEKLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGV----RHK 466

Query: 475 MGAEDSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSG 534
           +  ED    + + +++IDYE  +     S+ AA  R +NV   V+ +      T++    
Sbjct: 467 VALEDPIAALHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALK----NTLEKDEE 522

Query: 535 ADNPIETERKSLLEVAQTISLLSTISERQQDQDVVTLSTLHASKGLEWPHVMLIGVSEGL 594
            D  IE     L+       +L    E +++ + V + TLHASKGLE+P+V ++G+ E +
Sbjct: 523 GDMTIEDAIGKLV----LRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEI 578

Query: 595 LPFKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVP 654
           LP         +  +  DT   ++EERRL YVGITRA+++LA ++  KRKQ  E++ C P
Sbjct: 579 LP--------HRSSIEADT---IEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCTP 627

Query: 655 SRFIAEMGLDKATTR--EDPREKLKALRAEFA 684
           SRF+ E+  D       +D   ++KA R   A
Sbjct: 628 SRFLDELPPDDLAWEGLDDAPVEVKAARGNNA 659