Pairwise Alignments

Query, 289 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score = 93.2 bits (230), Expect = 6e-24
 Identities = 77/295 (26%), Positives = 146/295 (49%), Gaps = 18/295 (6%)

Query: 4   YLPFVISGLGLGAVYALSGVGLVVLYRSSGVLNFAFGAIGAIGAYVAWSMLE-------A 56
           +L  +++GL LG+VY L  +G  ++Y   G++NFA G +  I AY+A   L         
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGIE 64

Query: 57  DWPQALAWSAAIVTSMLLSLAYG----RLLAPRLSHRDPTIRSIATLGFALVVVGFTEWY 112
            +P  L     ++ +++++  YG    R+    L +       I+ +G +L++  + +  
Sbjct: 65  SFP--LLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIA 122

Query: 113 WGEQPRRLVLPT-DAGAIDFVLGEVEVRLTHTRALGLTLAVLMMGGVGLLLSKTRVGLKM 171
            G + +   +PT  AGA    +G   V+LT+T+   L  A   M  +  ++  T++G   
Sbjct: 123 QGAKQQG--IPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMC 180

Query: 172 RALANDRDLSALLGIRVLGVDTVAWVLSGAFAGVCGLLLANIVRLQATLLTFLV-IPAFA 230
           RA   DR ++++LGI    V +  +V+  A A + G+L+            F++ I AF 
Sbjct: 181 RATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFT 240

Query: 231 AAIIGRLHSLPATVAGGIAIGVLEALAITVPGFASFRTATPFLIALAMIVFYRTG 285
           AA++G + SLP  + GGI +G+ E+L   +   + ++    F + + +++F   G
Sbjct: 241 AAVLGGIGSLPGAMLGGIILGISESLFSGLIN-SDYKDVFSFSLLVVILIFRPQG 294